Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1129
(498 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3684| Best HMM Match : fn3 (HMM E-Value=8e-11) 38 0.003
SB_38138| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_15630| Best HMM Match : p450 (HMM E-Value=0) 29 2.1
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_55278| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_47526| Best HMM Match : Churchill (HMM E-Value=0.52) 27 6.5
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_3684| Best HMM Match : fn3 (HMM E-Value=8e-11)
Length = 862
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -2
Query: 470 DSRRGHATIT-DQDDDDVPPIQGFSDDEPLVIA 375
+SR G +T +D++D P IQGFSDDEPLV A
Sbjct: 830 NSRSGGDEVTLHRDEEDEPLIQGFSDDEPLVTA 862
>SB_38138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 568
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV +++ YRT SIQ + S QY
Sbjct: 62 YQTVSIQYAYQTVSIQYAYRTVSIQYVYQTVSIQY 96
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV +++ YRT SIQ + S QY
Sbjct: 107 YRTVSIQYAYRTVSIQYAYRTVSIQYVYQTVSIQY 141
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV ++F YRT SIQ S QY
Sbjct: 251 YRTVSIQYAYQTVSIQFAYRTVSIQYTYRTVSIQY 285
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV ++F Y+T SIQ + S QY
Sbjct: 440 YRTVSIQYAYQTVSIQFAYQTVSIQYVYRTVSIQY 474
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 44 Y*YFSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
Y Y++ +SI Y TV ++F YRT SIQ S QY
Sbjct: 177 YAYWT-VSIQYVYRTVSIQFAYRTVSIQYAYRTVSIQY 213
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV +++ YRT SIQ S QY
Sbjct: 458 YQTVSIQYVYRTVSIQYAYRTVSIQFAYQTVSIQY 492
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV ++F Y+T SIQ S QY
Sbjct: 17 YRTVSIQYAYRTVSIQFAYQTVSIQFAYQAVSIQY 51
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV +++ Y+T SIQ + S QY
Sbjct: 71 YQTVSIQYAYRTVSIQYVYQTVSIQYVYQTVSIQY 105
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV +++ YRT SIQ S QY
Sbjct: 89 YQTVSIQYVYQTVSIQYAYRTVSIQYAYRTVSIQY 123
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV +++ YRT SIQ S QY
Sbjct: 98 YQTVSIQYAYRTVSIQYAYRTVSIQYAYRTVSIQY 132
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV +++ YRT SIQ S QY
Sbjct: 278 YRTVSIQYAYRTVSIQYAYRTVSIQYAYQTVSIQY 312
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV +++ YRT SIQ S QY
Sbjct: 530 YQAVSIQYAYRTVSIQYAYRTVSIQYAYRTVSIQY 564
>SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1162
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 44 Y*YFSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
Y Y + +SI Y TV +++ YRT SIQ S QY
Sbjct: 271 YAYRTAVSIQYAYRTVSIQYAYRTVSIQYAYRTVSIQY 308
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 44 Y*YFSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
Y Y + +SI Y V +++ YRT SIQ S QY
Sbjct: 216 YAYRTAVSIQYAYQAVSIQYAYRTVSIQYAYQTVSIQY 253
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV +++ YRT SIQ S QY
Sbjct: 301 YRTVSIQYAYQTVSIQYAYRTISIQYAYQTVSIQY 335
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV +++ YRT SIQ S QY
Sbjct: 319 YRTISIQYAYQTVSIQYAYRTVSIQYAYQAVSIQY 353
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV +++ YRT SIQ S QY
Sbjct: 283 YRTVSIQYAYRTVSIQYAYRTVSIQYAYQTVSIQY 317
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 53 FSPLSIFYKCVTVPVRFNYRTFSIQIINPVFSPQY 157
+ +SI Y TV +++ YRT SIQ S QY
Sbjct: 346 YQAVSIQYAYRTVSIQYAYRTVSIQYAYRTVSIQY 380
>SB_15630| Best HMM Match : p450 (HMM E-Value=0)
Length = 965
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 197 CEKDIYFTGQKGTQSYLTD--YYGQYVKTGSH 286
CE+DI T KG+ ++ YY +YVKT +H
Sbjct: 465 CEEDILLTMHKGSITHGAQRLYYSRYVKTINH 496
>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 461 RGHATITDQDDDDVPPIQGFSDDE 390
RGH T +D DDD I SDD+
Sbjct: 70 RGHTTSSDSSDDDTNVIYDESDDD 93
>SB_55278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 27.5 bits (58), Expect = 6.5
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +3
Query: 165 FEISTIIYNLNVKKTFTLQGKKVRNHT 245
+++ I+Y++N K+ +++Q K+ +HT
Sbjct: 60 YDVDVILYDINEKELYSVQKKQYDSHT 86
>SB_47526| Best HMM Match : Churchill (HMM E-Value=0.52)
Length = 890
Score = 27.5 bits (58), Expect = 6.5
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = -2
Query: 494 HSPHTPRYDSRRGHATITDQDDDDVPPIQGFSDDEPLVIA*RACDRTSVIIQS*SCFKNY 315
H TP Y + I + D ++ P+ + + PL++A + T + I++ KN
Sbjct: 40 HQEMTPLYLRAKNSPLILETDQQEMTPLYLRAINSPLILATDHQEMTLLYIRA----KNS 95
Query: 314 ISVLSTH*NNVTQSSHTARNNP 249
+L T +T A+N+P
Sbjct: 96 PHILETDQQKMTLLCLRAKNSP 117
>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 233 TQSYLTDYYGQYVKTGSHYFNASIKH*YN 319
T LTD Y++T + ++++S+KH +N
Sbjct: 2 TSMILTDATAAYLQTSTLFYSSSVKHFHN 30
>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 212 YFTGQKGTQSYLTDYYGQYVKTGSHYFNASIKH 310
Y+ G Q+ L DYYG KT + N S H
Sbjct: 88 YYCLNDGQQACLNDYYGTLCKTYCYPHNDSTGH 120
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,300,249
Number of Sequences: 59808
Number of extensions: 247183
Number of successful extensions: 605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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