Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1129
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   1.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.1  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 494 HSPHTPRYDSRRGHATITDQDDDD 423
           HS HT  Y S +GH  I D  DD+
Sbjct: 258 HS-HTIIYLSAKGHRPIDDNIDDE 280


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 99  VLITEHFQYKLLTPYLVRNIDKF 167
           +L TE   +  +TP   RNID++
Sbjct: 352 ILATEPTLFSNVTPKFPRNIDEY 374


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 328 QDHD*MMTLVLSQARQAITSGSSS 399
           Q H  ++T  LSQ +QA   G++S
Sbjct: 230 QQHQGVVTSPLSQQQQAAPQGAAS 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,396
Number of Sequences: 438
Number of extensions: 2372
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)