Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1129
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54450.1 68416.m06024 proton-dependent oligopeptide transport...    31   0.57 
At2g21500.2 68415.m02559 expressed protein                             27   7.0  
At2g21500.1 68415.m02558 expressed protein                             27   7.0  
At1g17880.1 68414.m02212 nascent polypeptide-associated complex ...    27   9.3  

>At3g54450.1 68416.m06024 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 488

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 18  LTNNLNEIFISIFLHYLSFTN-V*LCLFVLITEHFQYKLL 134
           L NNLN   +  +   ++  N V LC ++ I  HF YK L
Sbjct: 438 LVNNLNRAHLDYYYWIIASLNAVSLCFYLFIANHFLYKKL 477


>At2g21500.2 68415.m02559 expressed protein
          Length = 421

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 99  VLITEHFQYKLLTPYLVRNIDKFEISTIIYNLNVKKTFTLQGKKVR 236
           +L   H  +      +   IDKF+ S  I  L  KKTF L  K ++
Sbjct: 280 ILACGHVYHSECLEQMTPEIDKFDPSCPICTLGEKKTFKLSEKALK 325


>At2g21500.1 68415.m02558 expressed protein
          Length = 421

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 99  VLITEHFQYKLLTPYLVRNIDKFEISTIIYNLNVKKTFTLQGKKVR 236
           +L   H  +      +   IDKF+ S  I  L  KKTF L  K ++
Sbjct: 280 ILACGHVYHSECLEQMTPEIDKFDPSCPICTLGEKKTFKLSEKALK 325


>At1g17880.1 68414.m02212 nascent polypeptide-associated complex
           (NAC) domain-containing protein / BTF3b-like
           transcription factor, putative similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain; identical to cDNA
           BTF3b-like factor GI:5912423
          Length = 165

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 452 ATITDQDDDDVPPIQG 405
           ATI ++DDDDVP + G
Sbjct: 132 ATIQEEDDDDVPELVG 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,519,131
Number of Sequences: 28952
Number of extensions: 161472
Number of successful extensions: 384
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)