Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1128
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    44   2e-05
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.3  
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa...    27   3.1  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   7.1  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   9.3  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   9.3  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.3  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 24/67 (35%), Positives = 38/67 (56%)
 Frame = -3

Query: 616 ECRYGLFDFEYTAPVPGHVGG*QETEALPDVVVPGHAKVKKKMLYSSSFDALKKSLVGVQ 437
           +CRY ++DFE+      ++G     + +     P  A +K KM+YSSS D L+++  G+ 
Sbjct: 61  DCRYAIYDFEF------NLGEGVRNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIG 114

Query: 436 KYIQATD 416
             IQATD
Sbjct: 115 TDIQATD 121


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -2

Query: 470 RRSEKVPCRSSEVHPSDRPLEASQEAVEEKLRATDRQ*TAFTHELATKPNPLSDTP 303
           +++ K   +S+    S  P+E +Q A EE+   T  Q   FT  +  K     D P
Sbjct: 59  KKAAKKKKQSAAASASSTPVEEAQHAQEEQQEQTILQEPGFTQTIVEKDADQVDEP 114


>SPBC337.15c |coq7||ubiquinone biosynthesis protein
           Coq7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 459 KSPLSEFRSTSKRPTSRSVSGGRRREAPRHRSPINSI 349
           +S L+EFR       + +V G   +EAP H    N+I
Sbjct: 166 RSHLAEFRDDELEHLNTAVEGWNAKEAPAHALLTNAI 202


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 438 RSTSKRPTSRSVSGGRRREAPRHRS 364
           +S  +RPT RSV G  RR    HRS
Sbjct: 129 QSLQRRPTGRSVRGSMRR-LSSHRS 152


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 158 CREA-VMRFGLKGGAAVVTIWVAHLCC 81
           CR A  +R G+K G  ++ I V  +CC
Sbjct: 7   CRSANTLRKGIKNGKLILKIIVNDVCC 33


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -1

Query: 381 APRHRSPINSIYTRARDETEPALRHSCPDDTRPRHH*PL 265
           APR R P  ++ T A  E  P  +   P  TR     PL
Sbjct: 24  APRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPL 62


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 520 VPGHAKVKKKMLYSSS 473
           VP +A V++KMLY+SS
Sbjct: 87  VPENANVRRKMLYASS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,198
Number of Sequences: 5004
Number of extensions: 52163
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)