Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1128
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013) 34 0.11
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41) 29 3.2
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_39636| Best HMM Match : WSC (HMM E-Value=0.34) 29 4.3
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41) 29 4.3
SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38) 29 4.3
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1) 28 7.5
SB_32849| Best HMM Match : Toxin_10 (HMM E-Value=4.2) 28 7.5
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17) 28 7.5
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 27 9.9
SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15) 27 9.9
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12) 27 9.9
>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
Length = 310
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = -3
Query: 508 AKVKKKMLYSSSFDALKKSLVGVQKYIQATD 416
A +KKKML S+++ LKK G++KY +A++
Sbjct: 265 APIKKKMLAGSTWEYLKKKFDGLKKYFEASE 295
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 31.1 bits (67), Expect = 0.80
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = -1
Query: 501 SRRRCCTLARSTL*KSPLSEFRSTSKRPTSRSVSGGRRREAPRHRSPINS----IYTRAR 334
SR R + +RS +SP RS S P RS RRR PR S +S + AR
Sbjct: 623 SRSRSSSYSRSRS-RSPDRRKRSYSPPPRRRSPFRERRRSPPRRTSRWSSQSPDRRSPAR 681
Query: 333 DETEPALRHSCPDDTRPRH 277
++ PA S PRH
Sbjct: 682 IKSSPARSRSRSQSASPRH 700
Score = 30.3 bits (65), Expect = 1.4
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Frame = -1
Query: 513 DTPRSRRRCCTLARSTL*KSPLSEFRS--TSKRPTSRSVSGG-----RRREAPRHRSPIN 355
D+P R++ R +SP+ RS S R RS SG RR E+PR R
Sbjct: 802 DSPPERKKGSVSPRDQRRRSPMRRRRSRDASPRRRRRSASGSDSSPHRRSESPRDRRR-R 860
Query: 354 SIYTRARDETEPALRHSCPDDTRPR 280
S R R E P R D+ PR
Sbjct: 861 SPEHRRRREASPPRRDRKRYDSPPR 885
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = -1
Query: 561 SEASKKQKLFLMSWCPDTPRSRRRCCTLARSTL*KSPLSEFRSTSKRPTSRSVSGGRRRE 382
++ SK+ + +S P+ R R R + +SP +S+ +RP R R
Sbjct: 998 TKGSKRSESRSVSRSPERDRKGRDSAKKERQSHSESPQRVTKSSKERPRKRP------RH 1051
Query: 381 APRHRSPINSIYTRARDE-TEPALRHSCPDDTR 286
R R P +S R+R + T P+ R + P+D R
Sbjct: 1052 QSRERRPSSSPPRRSRPQRTSPSPRRT-PEDRR 1083
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/50 (44%), Positives = 26/50 (52%)
Frame = -1
Query: 510 TPRSRRRCCTLARSTL*KSPLSEFRSTSKRPTSRSVSGGRRREAPRHRSP 361
+PR RRR +RS +SP+ RS S SRS SG R R RSP
Sbjct: 114 SPRGRRR----SRS---RSPVRRRRSPSLERRSRSRSGSRERRRSPSRSP 156
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 29.9 bits (64), Expect = 1.9
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = -1
Query: 570 QGTSEASKKQKLFLMSWCPDTPRSR-RRCCTLARSTL*KSPLSEFRSTSKRPTSRSVSGG 394
+G S + K S + RSR RR ++ R +S RS+ R RS S
Sbjct: 307 RGQSSRERNTKRKSKSPSLERRRSRARRSRSIERRDRRRSRSRSPRSSLGRSRRRSSSRN 366
Query: 393 RRREAPRHRSPINSIYTRARDETEPALRHS 304
RRR R +SP+N T+++ E E + S
Sbjct: 367 RRRRRSRSKSPLN---TKSQCEKEQRVSRS 393
>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
Length = 257
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 58 PLNTWWAVSSSNHLSNKKK 2
P+ TW S SNH S+KKK
Sbjct: 99 PMKTWLRASDSNHKSSKKK 117
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 93 CHPYSY--NGCPALQTETHYCFTAEIGRGRWYLPARTHKRSYH 215
CHP N C +T+ + C + + WY P++T YH
Sbjct: 437 CHPTKTQANWCHPTKTQANLCHPTKT-QANWYHPSKTQANWYH 478
>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 585 YSKSNRPYLHSPVP-PFCRS 641
YS +RPY HSPV P+C S
Sbjct: 112 YSPVDRPYCHSPVDRPYCHS 131
>SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)
Length = 390
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 201 CESARVGTTAPCLFLP*SSNAFRFEGRGSRCNYMGGTFML 82
C+S TT+ C++L NA RC +GGTF L
Sbjct: 207 CKSGWHSTTSRCIYL--MPNATYPGSTAERCRLLGGTFFL 244
>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
Length = 686
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 438 RSTSKRPTSRSVSGGRR-REAPRHRSPINSIYTRARDETEPALRHSCPDDTRPRH 277
R T+ RP+ S + R+AP HR+P + E+ PA +H+ T R+
Sbjct: 407 RPTTSRPSHTSATEYYPDRQAPGHRTPDRHTHNNHAPESYPAAQHTPEHLTNTRN 461
>SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)
Length = 501
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/74 (27%), Positives = 28/74 (37%)
Frame = -1
Query: 636 CRRAVPGNADMACLTLNTRHQCQGTSEASKKQKLFLMSWCPDTPRSRRRCCTLARSTL*K 457
C R +P N + + R +E + KL L + CP T R R L
Sbjct: 273 CPRKLPRNLSICPVLCQPRESRTAQTEPKTRPKLALPAQCPATCRPTRSSQGLTTPKTTG 332
Query: 456 SPLSEFRSTSKRPT 415
+P + S KR T
Sbjct: 333 TPRTRKLSDKKRKT 346
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/68 (33%), Positives = 31/68 (45%)
Frame = -1
Query: 510 TPRSRRRCCTLARSTL*KSPLSEFRSTSKRPTSRSVSGGRRREAPRHRSPINSIYTRARD 331
+PR RRR + R +SP RS R SRS RR R RSP + + R+R
Sbjct: 230 SPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRS----PRRRHSRSRSPTHRRH-RSRS 284
Query: 330 ETEPALRH 307
+ +H
Sbjct: 285 HSPEKKKH 292
>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
Length = 256
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -1
Query: 504 RSRRRCCTLARSTL*KSPLSEFRSTSKRPTSRSVSGGRRREAPRHRSPINSIYTRARDET 325
RSR R +RS +S S+ P+S S R+R +P RS + R D+
Sbjct: 119 RSRSRSRGRSRSYSISISPDSHKSRSESPSSDGESPDRQRPSPHRRSRPRNRKDRQLDKK 178
Query: 324 EPALRHS-CPDDTRPR 280
L +S P +PR
Sbjct: 179 TKTLPNSYAPKRDKPR 194
>SB_32849| Best HMM Match : Toxin_10 (HMM E-Value=4.2)
Length = 322
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 594 TLNTRHQCQGTSEASKKQKLFLMSWCPDTPRSRRRCCTLARSTL 463
TLN + C S+++ K M+ T +R C T++ STL
Sbjct: 119 TLNDKRACTTVSDSTLIDKRACMAVSDSTLNDKRACTTVSDSTL 162
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 594 TLNTRHQCQGTSEASKKQKLFLMSWCPDTPRSRRRCCTLARSTL 463
TLN + C S+++ K M+ T +R C T++ STL
Sbjct: 147 TLNDKRACTTVSDSTLIDKRACMAVSDSTLNDKRACTTVSDSTL 190
>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
Length = 409
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 401 QEAVEEKLRATDRQ*TAFTHEL--ATKPNPLSDTPALTTRGH 282
+E K+ AT+ AFTH+L KP +SD P + +G+
Sbjct: 22 EETPPIKIEATNHHAKAFTHDLENLAKPLKVSDVPNVFLQGY 63
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 27.5 bits (58), Expect = 9.9
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = -1
Query: 582 RHQCQGTSEASKKQKLFLMSWCPDTPRSRRRCCTLARSTL*KSPLSEFRSTSKRPTSRSV 403
RH+ + +S +S+++ D RSR R + ++S S RS S RS
Sbjct: 276 RHRSRSSSLSSRRRSKHKRKSKRDRSRSRDRSSSKSKSLRRSKKYSRSRSRSSERRRRSR 335
Query: 402 S-GGRRREAPRHRSPINSIYTRARDETEPALRH 307
S R R RSP R T P+ R+
Sbjct: 336 SRSTEHRYRSRSRSPRRK--HRRSTSTSPSRRY 366
>SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15)
Length = 629
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -2
Query: 476 LVRRSEKVPCRSSEVHPSDRPLEASQEAVEEKLRATDRQ*TAF 348
++ R++KV + +++ + +E +Q+ +EE RAT R AF
Sbjct: 323 ILGRAKKVASKLTDIEQAMALVEEAQQHIEENKRATRRDLDAF 365
>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
Length = 872
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 107 LQRLPRPSNRNALLLHGRNRQGA 175
+QR P P+ RN++ LHG Q A
Sbjct: 30 VQRRPEPTPRNSIFLHGLRAQTA 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,197,423
Number of Sequences: 59808
Number of extensions: 459553
Number of successful extensions: 1512
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1506
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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