Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1128
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       44   1e-04
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    44   1e-04
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    44   1e-04
L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       39   0.003
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    39   0.003
Z66565-7|CAE17924.1|  287|Caenorhabditis elegans Hypothetical pr...    31   0.53 
L12018-4|AAK68342.1|  456|Caenorhabditis elegans Dnaj domain (pr...    30   1.6  
L12018-3|AAK68343.1|  446|Caenorhabditis elegans Dnaj domain (pr...    30   1.6  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    29   2.8  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    29   2.8  
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    29   3.7  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 25/64 (39%), Positives = 38/64 (59%)
 Frame = -3

Query: 616 ECRYGLFDFEYTAPVPGHVGG*QETEALPDVVVPGHAKVKKKMLYSSSFDALKKSLVGVQ 437
           +CRY +FDF++T    G  G  +  + +   + P  A +KKKM+Y+SS  A+K SL G  
Sbjct: 79  DCRYAVFDFKFTCSRVG-AGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSL-GTG 136

Query: 436 KYIQ 425
           K +Q
Sbjct: 137 KILQ 140


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 25/64 (39%), Positives = 38/64 (59%)
 Frame = -3

Query: 616 ECRYGLFDFEYTAPVPGHVGG*QETEALPDVVVPGHAKVKKKMLYSSSFDALKKSLVGVQ 437
           +CRY +FDF++T    G  G  +  + +   + P  A +KKKM+Y+SS  A+K SL G  
Sbjct: 79  DCRYAVFDFKFTCSRVG-AGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSL-GTG 136

Query: 436 KYIQ 425
           K +Q
Sbjct: 137 KILQ 140


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 25/64 (39%), Positives = 38/64 (59%)
 Frame = -3

Query: 616 ECRYGLFDFEYTAPVPGHVGG*QETEALPDVVVPGHAKVKKKMLYSSSFDALKKSLVGVQ 437
           +CRY +FDF++T    G  G  +  + +   + P  A +KKKM+Y+SS  A+K SL G  
Sbjct: 79  DCRYAVFDFKFTCSRVG-AGTSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSL-GTG 136

Query: 436 KYIQ 425
           K +Q
Sbjct: 137 KILQ 140



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -3

Query: 517 PGHAKVKKKMLYSSSFDALKKSLVGVQKYIQ 425
           P +A V+++MLY+SS  ALK SL G++   Q
Sbjct: 159 PDNAPVRRRMLYASSVRALKASL-GLESLFQ 188


>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/64 (37%), Positives = 33/64 (51%)
 Frame = -3

Query: 616 ECRYGLFDFEYTAPVPGHVGG*QETEALPDVVVPGHAKVKKKMLYSSSFDALKKSLVGVQ 437
           ECRY   D E T    G  G     + +     P +A V+++MLY+SS  ALK SL G++
Sbjct: 66  ECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLE 124

Query: 436 KYIQ 425
              Q
Sbjct: 125 SLFQ 128


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/64 (37%), Positives = 33/64 (51%)
 Frame = -3

Query: 616 ECRYGLFDFEYTAPVPGHVGG*QETEALPDVVVPGHAKVKKKMLYSSSFDALKKSLVGVQ 437
           ECRY   D E T    G  G     + +     P +A V+++MLY+SS  ALK SL G++
Sbjct: 66  ECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLE 124

Query: 436 KYIQ 425
              Q
Sbjct: 125 SLFQ 128


>Z66565-7|CAE17924.1|  287|Caenorhabditis elegans Hypothetical
           protein T04F8.9 protein.
          Length = 287

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 28/96 (29%), Positives = 40/96 (41%)
 Frame = -1

Query: 456 SPLSEFRSTSKRPTSRSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRPRH 277
           SP S F  TS + ++  +S     E+P   SPI+ IY RA     P  RH      +PR 
Sbjct: 173 SPPSPFFGTSVQTSTMYLSAEDMSESPTPTSPIHRIYIRA---PSPVRRHPA---RKPRR 226

Query: 276 H*PLSIIKRKTNSINMIDFTGGRTSCESARVGTTAP 169
             P     ++T  +   D +   TS    +  T  P
Sbjct: 227 QSPRVPKPQETVIVMEQDNSEASTSTSVPKTPTRTP 262


>L12018-4|AAK68342.1|  456|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 10, isoform a
           protein.
          Length = 456

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +3

Query: 465 ASNELEYNIFFLTLACPGTTTS-GRASVSC*PPTCPGTGAVYSKSNRPYLHSPVPPFCRS 641
           A+  +  N+    L C GT    G    SC  P C GTGAV  +    + +      CR 
Sbjct: 179 ATKNVSVNVVEDCLKCHGTQVEPGHKKTSC--PYCNGTGAVSQRLQGGFFYQTTCNRCRG 236

Query: 642 S 644
           S
Sbjct: 237 S 237


>L12018-3|AAK68343.1|  446|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 10, isoform b
           protein.
          Length = 446

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +3

Query: 465 ASNELEYNIFFLTLACPGTTTS-GRASVSC*PPTCPGTGAVYSKSNRPYLHSPVPPFCRS 641
           A+  +  N+    L C GT    G    SC  P C GTGAV  +    + +      CR 
Sbjct: 179 ATKNVSVNVVEDCLKCHGTQVEPGHKKTSC--PYCNGTGAVSQRLQGGFFYQTTCNRCRG 236

Query: 642 S 644
           S
Sbjct: 237 S 237


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = -1

Query: 513 DTPRSRRRCCTLARSTL*KSPLSEFRSTSKRP-TSRSVSGGRRREAPRH--RSPINSIYT 343
           + PR R R     R    K    E R  S++P +SRS S  R RE PR   R P     +
Sbjct: 168 EKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSRSKSPRRSREDPRKVARKP-----S 222

Query: 342 RARDETEPALRHSCPDDTRPRHH*PLSIIKRKTNS 238
           R+R  +   LR       R R   P  + + ++ S
Sbjct: 223 RSRSRSAERLRRKSRSPRRSREE-PRKMSRSRSRS 256


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = -1

Query: 513 DTPRSRRRCCTLARSTL*KSPLSEFRSTSKRP-TSRSVSGGRRREAPRH--RSPINSIYT 343
           + PR R R     R    K    E R  S++P +SRS S  R RE PR   R P     +
Sbjct: 168 EKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSRSKSPRRSREDPRKVARKP-----S 222

Query: 342 RARDETEPALRHSCPDDTRPRHH*PLSIIKRKTNS 238
           R+R  +   LR       R R   P  + + ++ S
Sbjct: 223 RSRSRSAERLRRKSRSPRRSREE-PRKMSRSRSRS 256


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 294 RQGRSVGERVRFRRELVCKCC 356
           R+GR  G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 429 SKRPTSRSVSGGRRREAPRHRSPINSIYTRARDETEPA 316
           S+  T  ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 683 SQSTTLTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 429 SKRPTSRSVSGGRRREAPRHRSPINSIYTRARDETEPA 316
           S+  T  ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 683 SQSTTLTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -1

Query: 504 RSRRRCCTLARSTL*KSPLSEFRSTSKRPTSRSVSGGRRREAPRHRSP 361
           R+RR      R  + +SP+   RS  +R  SRS S   RR+  R RSP
Sbjct: 110 RTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQ-QRSRSP 156


>Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9b protein.
          Length = 625

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = -1

Query: 528 MSWCPDTPR--SRRRCCTLARSTL*KSPLSEFRSTSKRPTSRSVSGGRRREAPRHRSPIN 355
           +SW  D  R  + +R   +  ++  +   S+ + +SKR  S  V  GR +   R RSP  
Sbjct: 122 LSWFRDIRRYCAYQRAKQVRSNSQRRRRRSDSQESSKRSASPPVRRGRSKSRSRSRSPSR 181

Query: 354 SIYTRARDETEPALRHSCP 298
           S   R+R  +    R   P
Sbjct: 182 S---RSRSRSRSVSRSKSP 197


>Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9a protein.
          Length = 553

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = -1

Query: 528 MSWCPDTPR--SRRRCCTLARSTL*KSPLSEFRSTSKRPTSRSVSGGRRREAPRHRSPIN 355
           +SW  D  R  + +R   +  ++  +   S+ + +SKR  S  V  GR +   R RSP  
Sbjct: 122 LSWFRDIRRYCAYQRAKQVRSNSQRRRRRSDSQESSKRSASPPVRRGRSKSRSRSRSPSR 181

Query: 354 SIYTRARDETEPALRHSCP 298
           S   R+R  +    R   P
Sbjct: 182 S---RSRSRSRSVSRSKSP 197


>U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical
           protein F01F1.7 protein.
          Length = 730

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 438 RSTSKRPTSRSVSGGRRREAPRHRSPINSIYTRARDETE 322
           R   +R  SR   GGRRR+  R R   +    R RD  E
Sbjct: 106 RDRRRRSRSRDRDGGRRRDRSRSRDRRDRNDDRKRDRNE 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,172,806
Number of Sequences: 27780
Number of extensions: 325138
Number of successful extensions: 933
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)