Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1127
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 98 9e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 48 2e-06
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 43 3e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 42 8e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 40 3e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 39 6e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 39 7e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 36 0.004
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 36 0.007
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 36 0.007
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 34 0.016
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 34 0.016
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 34 0.016
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 33 0.028
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 32 0.064
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 32 0.085
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 31 0.20
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 30 0.34
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 29 0.45
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.79
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 0.79
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 0.79
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 28 1.0
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 28 1.4
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 1.8
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 27 2.4
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.2
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.2
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.4
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 25 9.7
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 9.7
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 25 9.7
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 25 9.7
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 98.3 bits (234), Expect = 9e-22
Identities = 51/120 (42%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Frame = +1
Query: 259 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 439 KTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPAKRWPTSCQPLCT*I-TNPPIRRGDGP 615
K +G++ PTPIQ Q WP+AMSG+ + + + + C P I P + GDGP
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRD-MVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGP 196
Score = 29.9 bits (64), Expect = 0.34
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
PI LVLAPTRELA QI
Sbjct: 196 PIVLVLAPTRELAVQI 211
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 432
++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGK 507
+ ++GY++PT IQAQ P SG+
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGR 456
Score = 41.9 bits (94), Expect = 8e-05
Identities = 16/28 (57%), Positives = 24/28 (85%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQ 587
+D++GVA+TGSGKT+A++LP HI +Q
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQ 483
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
PIA+++ PTRELA QI
Sbjct: 492 PIAIIMTPTRELAVQI 507
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 43.2 bits (97), Expect = 3e-05
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQP 590
KDL+G+A+TGSGKT A+I+P I+ I+ P
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +1
Query: 340 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P A+VLAPTRELAQQI
Sbjct: 326 PYAVVLAPTRELAQQI 341
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 41.9 bits (94), Expect = 8e-05
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 502 GK 507
G+
Sbjct: 202 GR 203
Score = 38.7 bits (86), Expect = 7e-04
Identities = 14/26 (53%), Positives = 24/26 (92%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHIN 581
+D+VG+A+TGSGKT+A+ +PA+ ++N
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLN 228
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQPA 593
+D++G+AQTGSGKT A+ LP I + N P+
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPS 113
Score = 29.9 bits (64), Expect = 0.34
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
F+E D + + + +G+K PTPIQ + P+ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLN 82
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 620 ALVLAPTRELAQQI 661
A+VLAPTRELA QI
Sbjct: 117 AVVLAPTRELAYQI 130
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG+
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
Score = 29.9 bits (64), Expect = 0.34
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
+DL+ AQTGSGKT ++ P +
Sbjct: 207 RDLMACAQTGSGKTAGFLFPIL 228
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P L+LAPTREL QI
Sbjct: 256 PTTLILAPTRELVCQI 271
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 38.7 bits (86), Expect = 7e-04
Identities = 14/27 (51%), Positives = 23/27 (85%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINN 584
+D+VG+A+TGSGKT A+++P I H+ +
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKS 133
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
F+ + + + G+K PTPIQ + P+ + G+
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGR 107
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHI 578
+D++G A+TGSGKTLA+I+P I ++
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENL 101
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQP 590
KD+VG A TGSGKT A+I+P + + +P
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP 325
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 35.5 bits (78), Expect = 0.007
Identities = 13/22 (59%), Positives = 20/22 (90%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
+D++G A+TGSGKTLA+++P I
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI 148
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 34.3 bits (75), Expect = 0.016
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
KDLV A+TGSGKT AY++P +
Sbjct: 52 KDLVAQARTGSGKTAAYLIPIL 73
Score = 29.9 bits (64), Expect = 0.34
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 367 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGK 52
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 620 ALVLAPTRELAQQI 661
AL+L PTRELAQQ+
Sbjct: 91 ALLLVPTRELAQQV 104
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 34.3 bits (75), Expect = 0.016
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILP 563
KDLV A TGSGKTLAY+LP
Sbjct: 39 KDLVVEAVTGSGKTLAYLLP 58
Score = 30.7 bits (66), Expect = 0.20
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
F+ N +++ V G+K+ TP+QA P+ + K
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 620 ALVLAPTRELAQQI 661
AL++APTRELA QI
Sbjct: 75 ALIVAPTRELATQI 88
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 34.3 bits (75), Expect = 0.016
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQP 590
KD AQTGSGKTLAY+LP + + P
Sbjct: 179 KDAFIEAQTGSGKTLAYLLPIVQRLIRLP 207
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +2
Query: 620 ALVLAPTRELAQQI 661
A+++APTREL QQI
Sbjct: 219 AVIMAPTRELCQQI 232
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 33.5 bits (73), Expect = 0.028
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 507 DLVGVAQTGSGKTLAYILPAIVH 575
D++G A TGSGKTLA+ +P + H
Sbjct: 161 DIIGKADTGSGKTLAFGIPILEH 183
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 620 ALVLAPTRELAQQI 661
ALV+APTRELA QI
Sbjct: 195 ALVVAPTRELAHQI 208
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 32.3 bits (70), Expect = 0.064
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPAK 543
FE+ + G+ G++ P+PIQ + PIA+SG+ LA K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
Score = 27.9 bits (59), Expect = 1.4
Identities = 8/28 (28%), Positives = 21/28 (75%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQ 587
+D++ A+ G+GKT A+++P++ ++ +
Sbjct: 82 RDILARAKNGTGKTAAFVIPSLEKVDTK 109
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 31.9 bits (69), Expect = 0.085
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
+DL+ A TGSGKT+AY+ P +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPIL 105
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 30.7 bits (66), Expect = 0.20
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQPA 593
++ +G A+TGSGKT A+ LP I + P+
Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDPS 74
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 620 ALVLAPTRELAQQI 661
AL+L+PTRELA QI
Sbjct: 92 ALILSPTRELAVQI 105
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 29.5 bits (63), Expect = 0.45
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +2
Query: 620 ALVLAPTRELAQQI 661
AL+LAPTRELAQQI
Sbjct: 90 ALILAPTRELAQQI 103
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 28.7 bits (61), Expect = 0.79
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 507 DLVGVAQTGSGKTLAYILPAI 569
D+ A TGSGKTL+Y++P +
Sbjct: 175 DVCVSAATGSGKTLSYVIPIV 195
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.7 bits (61), Expect = 0.79
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 507 DLVGVAQTGSGKTLAYILPAIVHINNQ 587
+L+ V TG GK+L++++PA++ Q
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQ 1234
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.7 bits (61), Expect = 0.79
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 507 DLVGVAQTGSGKTLAYILPAIVHINNQ 587
+L+ V TG GK+L++++PA++ Q
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQ 1234
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.3 bits (60), Expect = 1.0
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -3
Query: 250 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--TR 77
P S V PS F ++ S +S AT+AK + +S KF + + T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 76 HDYFSDLVEDVYLNYGFFLTQG 11
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -3
Query: 571 TMAGKM*ANVLPEPVWATPTKSFQT*LSASLELGWASVLCNPLSLHLVAHNQENL 407
++A + A +LP P ++P+ +F+T S E G + C+P H A+ E++
Sbjct: 4 SVATSLKAEILPSPRTSSPSSNFKT--CVSNENGCINCRCSPSEPHESANVDESV 56
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 474 LDGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 334
+D FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 11 VDNYFFFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIV 572
KD+ + TG GK+L Y LPA++
Sbjct: 535 KDVFILMPTGGGKSLCYQLPAVI 557
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 587 TRLFGEVMVPIALVLAPTRELAQQI 661
+R+ V P A+ LAP+RELA+QI
Sbjct: 176 SRVDASVPKPQAICLAPSRELARQI 200
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHIN 581
++++G +Q+G+GKT A+ L + ++
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVD 179
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 319 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 450
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 319 PYEVEEYRNKHEVTVS 366
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 448 PLSLHLVAHNQENL--LLQSIE 389
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 522 AQTGSGKTLAYILPA 566
A+TG+GKTLA++L A
Sbjct: 83 AKTGTGKTLAFLLVA 97
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/28 (32%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 94 IIPITR-HDYFSDLVEDVYLNYGFFLTQ 14
++P+T+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 142 AEFVASSKFGTT-VSTAIIPITRHDYF 65
A F SS F T V+ ++IPI R+DY+
Sbjct: 448 AFFTVSSLFFTRFVNESLIPILRNDYY 474
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Frame = +1
Query: 235 ATPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNKHEVTVSGVEVHNPIQY 396
A R+G + +Q F + F+D P + + + H+ V+ V+ P+
Sbjct: 258 AVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKPMHV 317
Query: 397 FEEANFPDYVQQGVKT 444
E+ QG T
Sbjct: 318 VEQELLDGQKLQGAAT 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,527
Number of Sequences: 5004
Number of extensions: 59175
Number of successful extensions: 214
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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