Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1127
(663 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 6e-15
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 60 1e-09
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 58 8e-09
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 51 1e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 4e-06
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 48 5e-06
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 42 6e-04
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 35 0.051
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 35 0.051
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 35 0.068
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 33 0.21
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 32 0.36
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 31 0.84
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 31 0.84
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 31 1.1
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_51385| Best HMM Match : DEAD (HMM E-Value=0.00031) 30 1.5
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.5
SB_34740| Best HMM Match : DEAD (HMM E-Value=0.00031) 30 1.5
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 30 1.9
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 30 1.9
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 29 3.4
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 3.4
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 28 5.9
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10) 28 7.8
SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 7.8
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 78.2 bits (184), Expect = 6e-15
Identities = 40/125 (32%), Positives = 61/125 (48%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
P + +PFNKNFY+ HP + K+S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPAKRWPTSCQPLCT*ITNPPIR 600
+ ++ + Y +PT IQ Q PIA+SG+ + K K L + P ++
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQ 586
Query: 601 RGDGP 615
GDGP
Sbjct: 587 VGDGP 591
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
PI L+ APTREL QQI
Sbjct: 591 PIVLICAPTRELCQQI 606
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +1
Query: 313 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
PI LVL PTRELAQQ+
Sbjct: 133 PIVLVLCPTRELAQQV 148
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 58.0 bits (134), Expect = 6e-09
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 432
V QPF K+FY P + K +P E +E+R E + V G P++ + + +
Sbjct: 59 VVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILD 118
Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGK 507
+K Y++PTPIQAQ P+ MSG+
Sbjct: 119 VLKKNSYEKPTPIQAQAIPVIMSGR 143
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 57.6 bits (133), Expect = 8e-09
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 465
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 466 PIQAQGWPIAMSGK 507
PIQ Q P+ +SG+
Sbjct: 221 PIQMQVLPVLLSGR 234
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 50.8 bits (116), Expect = 1e-06
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Frame = +1
Query: 271 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 450
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 451 YKEPTPIQAQGWPIAMSGKI*LA*PKRVPAKRWPTSCQPLCT*I-TNPPIRRGDGP 615
++ PTPIQ Q MSG+ + + K S PLC + T P GD P
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSL-PLCMLLRTKAPSNPGDTP 146
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P+AL+L PTREL QQ+
Sbjct: 146 PVALILTPTRELMQQV 161
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 325 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 492
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 493 AMSG 504
G
Sbjct: 197 MAHG 200
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 337 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + +
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNR 139
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQP 590
+D++GVA+TGSGKT A+ +P +V I P
Sbjct: 139 RDIIGVAETGSGKTAAFAIPLLVWIMGLP 167
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P AL+LAPTRELAQQI
Sbjct: 179 PYALILAPTRELAQQI 194
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G+
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 749
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINN 584
+D++ AQTGSGKT A++LP + + N
Sbjct: 749 RDVMACAQTGSGKTAAFLLPVMTSMMN 775
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 596 FGEVMVPIALVLAPTRELAQQI 661
F E P A+ +APTRELA QI
Sbjct: 783 FSETQTPQAMCIAPTRELANQI 804
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G+
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 172
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHI 578
+D++G A+TGSGKTLA+ +P I HI
Sbjct: 169 RDIIGAAETGSGKTLAFGIPIIQHI 193
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 361 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
VSG I F E F + + + GY+ PTP+Q PI M+G+
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGR 517
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQ 587
+DL+ AQTGSGKT AY+LP + + Q
Sbjct: 517 RDLMACAQTGSGKTAAYMLPVLTSLIKQ 544
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P+AL +APTRELA+QI
Sbjct: 553 PLALCVAPTRELAKQI 568
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 438 KDNGLQRTDAHPSSRLADSYVWKDLVGVAQTGSGKTLAYILPAI 569
KD G +A +DL+G A+TGSGKTLA+++P +
Sbjct: 588 KDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVV 631
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 35.1 bits (77), Expect = 0.051
Identities = 13/22 (59%), Positives = 20/22 (90%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
+D++G A+TGSGKTLA+++P I
Sbjct: 88 RDVLGAAKTGSGKTLAFLIPII 109
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
++ F + G+ G+ PT IQ QG P+A+SG+
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGR 88
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 35.1 bits (77), Expect = 0.051
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQPAY 596
+D+ GVA GSGK LAY+LP I I Y
Sbjct: 225 RDVAGVAIEGSGKRLAYLLPIIHQITESSVY 255
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 34.7 bits (76), Expect = 0.068
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQP 590
KD++G+A+TGSGKT A+ LP + + + P
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP 30
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI--VHINNQPA 593
+DL+ AQTGSGKT A+++P + +++ PA
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRIYMEGPPA 944
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
I FE+ + + + V GYK+PTP+Q PI + GK
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPI-VKGK 912
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQP 590
+D +G A+TGSGKT A+ LP + + + P
Sbjct: 45 RDCIGCAKTGSGKTAAFALPILQKLCDDP 73
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQPA 593
KD+V +A+TGSGKT A+++P + A
Sbjct: 319 KDVVAMARTGSGKTAAFLIPMFEKLQTHTA 348
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 32.3 bits (70), Expect = 0.36
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +3
Query: 495 YVWKDLVGVAQTGSGKTLAYILPAI 569
Y +D++G A+TG+GKTL++ LP +
Sbjct: 108 YDGEDVIGQARTGTGKTLSFALPLV 132
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 510 LVGVAQTGSGKTLAYILPAIVH 575
++ AQTGSGKTLAY+ P +VH
Sbjct: 418 VICAAQTGSGKTLAYLAP-LVH 438
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 346 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ V +G+ PTPIQA P+A+ GK
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGK 48
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 474 SSRLADSYVWKDLVGVAQTGSGKTLAYILPAIVHINNQP 590
+S + + + KD+ A TG+GKT A++LP + + +P
Sbjct: 38 ASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP 76
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 373 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 486
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_51385| Best HMM Match : DEAD (HMM E-Value=0.00031)
Length = 127
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 483 LADSYVWKDLVGVAQTGSGKTLAY-ILPAIVH 575
L Y+ KD++ V TG GK+L + +LPA++H
Sbjct: 10 LESLYLNKDVLAVLPTGYGKSLVFHLLPALLH 41
>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 29
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -3
Query: 268 VGVKQIPIWASHVLPSREF 212
VGV+ I WAS++LPSR+F
Sbjct: 10 VGVRDIEQWASNLLPSRQF 28
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 319 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 450
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_34740| Best HMM Match : DEAD (HMM E-Value=0.00031)
Length = 233
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 483 LADSYVWKDLVGVAQTGSGKTLAY-ILPAIVH 575
L Y+ KD++ V TG GK+L + +LPA++H
Sbjct: 116 LESLYLNKDVLAVLPTGYGKSLVFHLLPALLH 147
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 620 ALVLAPTRELAQQI 661
ALVLAPTRELAQQI
Sbjct: 162 ALVLAPTRELAQQI 175
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPAK 543
FE+ + G+ G+ +P+PIQ + P+A++G+ LA K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPAK 543
FE+ + G+ G+ +P+PIQ + P+A++G+ LA K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 203 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 93
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 227 QNMRRPDWDLFHSNLSTKTFMIHILQFSKD 316
+N RR WD FHSN+S + H+ F D
Sbjct: 768 RNKRR--WDSFHSNVSADSGSAHMFDFDTD 795
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 331 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 423
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P ALVL+PTRELA QI
Sbjct: 4 PQALVLSPTRELANQI 19
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P ALVL+PTRELA QI
Sbjct: 66 PQALVLSPTRELANQI 81
>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
Length = 968
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 657 CCANSLVGAKTKAIGTITSPNRRVGYLCAQWLARCRPTFCRNPFGLRQLN 508
C A++L+G+ + I +T RRV Y C RC P + FGL N
Sbjct: 156 CQASNLLGSVERLI-YVTQWCRRVCYCCLFDSHRCSPGLEPDVFGLHMQN 204
>SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 278 LLKGWSETNPNLGVACSAL 222
LLKGW TN N +AC+A+
Sbjct: 150 LLKGWGATNFNHAMACAAV 168
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -2
Query: 269 GWSETNPNLGVACS--ALQRILFSHQSLQILQIYCHRCQTETNYRRICCLLQIWN-HRFH 99
GW T + S AL+RI + ++ C +YRR CC L +W H +
Sbjct: 181 GWRVTLRVIAATTSQQALERIATPVTTSKLRCSTTQECCVRVDYRRKCC-LHVWRVHTTN 239
Query: 98 GYYSN 84
Y+S+
Sbjct: 240 TYWSS 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,110,129
Number of Sequences: 59808
Number of extensions: 434261
Number of successful extensions: 1246
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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