Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1127
(663 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 100 7e-22
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 93 2e-19
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 93 2e-19
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 74 1e-13
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 70 1e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 70 1e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 70 1e-12
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 70 2e-12
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 69 2e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 62 3e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 54 6e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 49 3e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 1e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 43 2e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 42 5e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 41 8e-04
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 41 8e-04
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 39 0.003
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 39 0.003
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 39 0.003
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 38 0.006
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 38 0.006
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 37 0.014
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 36 0.018
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 36 0.024
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 36 0.024
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 36 0.024
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 36 0.032
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 34 0.073
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 34 0.073
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 34 0.097
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 34 0.097
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 34 0.097
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 33 0.13
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 33 0.13
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 33 0.22
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 32 0.30
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 32 0.30
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 31 0.52
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 31 0.68
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 31 0.68
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 31 0.68
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 31 0.68
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 31 0.68
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 31 0.90
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 31 0.90
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 31 0.90
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 31 0.90
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 31 0.90
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 30 1.2
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 30 1.2
At2g25460.1 68415.m03049 expressed protein 30 1.2
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 30 1.2
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 30 1.6
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 30 1.6
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 30 1.6
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 30 1.6
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 30 1.6
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 30 1.6
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 29 2.8
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 29 3.6
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 29 3.6
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 29 3.6
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 29 3.6
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 4.8
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 4.8
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 28 6.4
At3g48110.2 68416.m05246 aminoacyl-t-RNA synthetase, putative si... 28 6.4
At3g48110.1 68416.m05245 aminoacyl-t-RNA synthetase, putative si... 28 6.4
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 28 6.4
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 28 6.4
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 6.4
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 6.4
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 6.4
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 8.4
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 100 bits (240), Expect = 7e-22
Identities = 49/124 (39%), Positives = 66/124 (53%)
Frame = +1
Query: 244 RLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 423
+L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDY
Sbjct: 50 KLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDY 109
Query: 424 VQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPAKRWPTSCQPLCT*ITNPPIRR 603
V + VK G+ EPTPIQ+QGWP+AM G+ + + K + P +
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH 169
Query: 604 GDGP 615
GDGP
Sbjct: 170 GDGP 173
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
PI LVLAPTRELA QI
Sbjct: 173 PIVLVLAPTRELAVQI 188
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 92.7 bits (220), Expect = 2e-19
Identities = 38/89 (42%), Positives = 59/89 (66%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ + + +G+ EPTPIQAQGWP+A+ G+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 52.8 bits (121), Expect = 2e-07
Identities = 20/29 (68%), Positives = 28/29 (96%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQP 590
+DL+G+A+TGSGKTLAY+LPA+VH++ QP
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQP 231
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
PI L+LAPTRELA QI
Sbjct: 239 PIVLILAPTRELAVQI 254
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 92.7 bits (220), Expect = 2e-19
Identities = 38/89 (42%), Positives = 59/89 (66%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ + + +G+ EPTPIQAQGWP+A+ G+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 52.8 bits (121), Expect = 2e-07
Identities = 20/29 (68%), Positives = 28/29 (96%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQP 590
+DL+G+A+TGSGKTLAY+LPA+VH++ QP
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQP 231
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
PI L+LAPTRELA QI
Sbjct: 239 PIVLILAPTRELAVQI 254
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/120 (28%), Positives = 60/120 (50%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPAKRWPTSCQPLCT*ITNPPIRRGDGP 615
+K Y++PT IQ Q PI +SG+ + K K + + P ++R +GP
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGP 302
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/72 (44%), Positives = 42/72 (58%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGK 507
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
Score = 38.7 bits (86), Expect = 0.003
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHI 578
+D+V +A+TGSGKTL Y++P +H+
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHL 220
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2
Query: 608 MVPIALVLAPTRELAQQI 661
M P LVL+PTRELA QI
Sbjct: 229 MGPTILVLSPTRELATQI 246
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/72 (44%), Positives = 42/72 (58%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGK 507
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
Score = 38.7 bits (86), Expect = 0.003
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHI 578
+D+V +A+TGSGKTL Y++P +H+
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHL 220
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2
Query: 608 MVPIALVLAPTRELAQQI 661
M P LVL+PTRELA QI
Sbjct: 229 MGPTILVLSPTRELATQI 246
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/72 (44%), Positives = 42/72 (58%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGK 507
QAQ WPIAM G+
Sbjct: 185 QAQSWPIAMQGR 196
Score = 38.7 bits (86), Expect = 0.003
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHI 578
+D+V +A+TGSGKTL Y++P +H+
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHL 220
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2
Query: 608 MVPIALVLAPTRELAQQI 661
M P LVL+PTRELA QI
Sbjct: 229 MGPTILVLSPTRELATQI 246
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/120 (31%), Positives = 57/120 (47%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + V YR + E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPAKRWPTSCQPLCT*ITNPPIRRGDGP 615
+K + Y++P PIQAQ PI MSG+ + K K L PP+ GDGP
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 470
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
PI LV+APTREL QQI
Sbjct: 470 PIGLVMAPTRELVQQI 485
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 69.3 bits (162), Expect = 2e-12
Identities = 37/120 (30%), Positives = 57/120 (47%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + EV YR + E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPAKRWPTSCQPLCT*ITNPPIRRGDGP 615
+K + Y++P PIQ Q PI MSG+ + K K L PP+ GDGP
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 603
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
PI LV+APTREL QQI
Sbjct: 603 PIGLVMAPTRELVQQI 618
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.1 bits (144), Expect = 3e-10
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Frame = +1
Query: 274 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 441
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 442 TMGYKEPTPIQAQGWPIAMSGK 507
+ G+ PTPIQAQ WPIA+ +
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSR 473
Score = 37.1 bits (82), Expect = 0.010
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIV 572
+D+V +A+TGSGKTL Y++PA +
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFI 495
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P L+LAPTRELA QI
Sbjct: 508 PTVLILAPTRELATQI 523
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 54.4 bits (125), Expect = 6e-08
Identities = 27/86 (31%), Positives = 47/86 (54%)
Frame = +1
Query: 250 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 429
G +P + ++ P V K S +++ R + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ +K G PTPIQ QG P+ +SG+
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGR 135
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 438 KDNGLQRTDAHPSSRLADSYVWKDLVGVAQTGSGKTLAYILPAIV 572
KD G+ L +D++G+A TGSGKTL ++LP I+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/74 (31%), Positives = 41/74 (55%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 465
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 466 PIQAQGWPIAMSGK 507
PIQ QG P+ ++G+
Sbjct: 171 PIQVQGLPVILAGR 184
Score = 35.9 bits (79), Expect = 0.024
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIV 572
+D++G+A TGSGKTL ++LP I+
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIM 206
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +1
Query: 340 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/25 (64%), Positives = 24/25 (96%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHI 578
+DL+G+A+TGSGKTLA+ +PAI+H+
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHV 176
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 325 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 499 SGK 507
G+
Sbjct: 150 DGR 152
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 358 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
TV GV H F E N + + +T+GYK+PTPIQA P+A++G+
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 435 CKDNGLQRTDAHPSSRLADSYVWKDLVGVAQTGSGKTLAYILPAIVHINNQP 590
C+ G ++ ++ + + +DL A TGSGKT A+ LP + + +P
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP 233
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 316 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 489
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 490 IAMSGKI*LA 519
A++GK LA
Sbjct: 143 AALTGKSLLA 152
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
K L+ A TGSGKT ++++P I
Sbjct: 148 KSLLASADTGSGKTASFLVPII 169
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P+A+VLAPTREL Q+
Sbjct: 187 PLAMVLAPTRELCVQV 202
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/29 (48%), Positives = 24/29 (82%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQP 590
+D++G+A+TGSGKT A++LP + +I+ P
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLP 379
Score = 37.1 bits (82), Expect = 0.010
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +1
Query: 337 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ +
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGL 348
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P A+V+APTRELAQQI
Sbjct: 390 PYAVVMAPTRELAQQI 405
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 507 DLVGVAQTGSGKTLAYILPAIVHINNQPA 593
DLVG A+TG GKTLA++LP + + N PA
Sbjct: 135 DLVGRARTGQGKTLAFVLPILESLVNGPA 163
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 38.7 bits (86), Expect = 0.003
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHI 578
+D+V +A+TGSGKTL Y++P +H+
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHL 291
Score = 34.7 bits (76), Expect = 0.056
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGK 507
V + G+ P+PIQAQ WPIAM +
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNR 267
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2
Query: 608 MVPIALVLAPTRELAQQI 661
M P LVL+PTRELA QI
Sbjct: 300 MGPTILVLSPTRELATQI 317
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +3
Query: 435 CKDNGLQRTDAHPSSRLADSYVWKDLVGVAQTGSGKTLAYILPAIVHINNQP 590
CK+ G+++ + + +D++G+AQTGSGKT A+ LP + + P
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDP 124
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +3
Query: 438 KDNGLQRTDAHPSSRLADSYVWKDLVGVAQTGSGKTLAYILPAI 569
K+ G R + + + +D++G A+TGSGKTLA+++PA+
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Score = 30.7 bits (66), Expect = 0.90
Identities = 20/81 (24%), Positives = 34/81 (41%)
Frame = +1
Query: 265 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 444
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
MG+ T IQA+ P M G+
Sbjct: 172 MGFARMTQIQAKAIPPLMMGE 192
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/22 (63%), Positives = 21/22 (95%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
KD++G A+TGSGKTLA+++PA+
Sbjct: 127 KDVLGAARTGSGKTLAFLIPAV 148
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3
Query: 492 SYVWKDLVGVAQTGSGKTLAYILPAI 569
+Y KD++G A+TGSGKTLA+ LP +
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPIL 250
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 36.3 bits (80), Expect = 0.018
Identities = 13/38 (34%), Positives = 27/38 (71%)
Frame = +3
Query: 474 SSRLADSYVWKDLVGVAQTGSGKTLAYILPAIVHINNQ 587
S+ + + +D++G A+TGSGKTLA+++P + ++ +
Sbjct: 99 SAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE 136
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 35.9 bits (79), Expect = 0.024
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 438 KDNGLQRTDAHPSSRLADSYVWKDLVGVAQTGSGKTLAYILPAIVHINNQP 590
KD G + + L KD++ A+TG+GKT+A++LPAI + P
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSP 448
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 35.9 bits (79), Expect = 0.024
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 439 KTMGYKEPTPIQAQGWPIAMSGK 507
+ Y +PTP+Q PI + G+
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGR 197
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
+DL+ AQTGSGKT A+ P I
Sbjct: 197 RDLMACAQTGSGKTAAFCFPII 218
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P+A++L+PTRELA QI
Sbjct: 238 PLAVILSPTRELASQI 253
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 35.9 bits (79), Expect = 0.024
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
Score = 30.7 bits (66), Expect = 0.90
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +3
Query: 507 DLVGVAQTGSGKTLAYILPAI 569
D+V +A+TGSGKT A+++P +
Sbjct: 67 DVVAMARTGSGKTAAFLIPML 87
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
KD+V A+TGSGKTLAY+LP +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105
Score = 31.5 bits (68), Expect = 0.52
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 325 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 505 K 507
K
Sbjct: 84 K 84
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 34.3 bits (75), Expect = 0.073
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQPAY 596
KD+V A TGSGKTLA++LP I I +Y
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSY 84
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 34.3 bits (75), Expect = 0.073
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQPAY 596
KD+V A TGSGKTLA++LP I I +Y
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSY 85
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 33.9 bits (74), Expect = 0.097
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 438 KDNGLQRTDAHPSSRLADSYVWKDLVGVAQTGSGKTLAYILPAIVHINNQP 590
KD G + + L KD++ A+TG+GKT+A++LP+I + P
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSP 120
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 33.9 bits (74), Expect = 0.097
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
KD++G+AQTGSGKT A+ +P +
Sbjct: 47 KDVIGLAQTGSGKTGAFAIPIL 68
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 373 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGK 47
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 33.9 bits (74), Expect = 0.097
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 438 KDNGLQRTDAHPSSRLADSYVWKDLVGVAQTGSGKTLAYILPAIVHINN 584
+D+G R + + KD++ A+TGSGKT Y+ P I + N
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQP 590
KD++ A+TG+GKT+A++LP+I + P
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAP 146
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 268 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 444
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
Y +PTP+Q PI +G+
Sbjct: 164 CKYVKPTPVQRNAIPILAAGR 184
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
+DL+ AQTGSGKT A+ P I
Sbjct: 184 RDLMACAQTGSGKTAAFCFPII 205
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P+A++L+PTRELA QI
Sbjct: 225 PLAVILSPTRELACQI 240
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 438 KDNGLQRTDAHPSSRLADSYVWKDLVGVAQTGSGKTLAYILPAI 569
K G+++ + L + +D++G A+TG+GKTLA+ +P I
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P LVLAPTRELA+Q+
Sbjct: 191 PQCLVLAPTRELARQV 206
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
V SG +V P+ F + + D + ++ Y PTP+Q PI ++
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLA 187
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
+DL+ AQTGSGKT A+ P I
Sbjct: 189 RDLMACAQTGSGKTAAFCFPII 210
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
V SG +V P+ F + + D + ++ Y PTP+Q PI ++
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLA 187
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
+DL+ AQTGSGKT A+ P I
Sbjct: 189 RDLMACAQTGSGKTAAFCFPII 210
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 31.5 bits (68), Expect = 0.52
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
+D++G A+TG+GKTLA+ +P I
Sbjct: 142 RDMIGRARTGTGKTLAFGIPII 163
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P+ LVLAPTRELA+Q+
Sbjct: 179 PLCLVLAPTRELARQV 194
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPAK 543
FE+ + G+ G++ P+PIQ + PIA++G+ LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPAK 543
FE+ + G+ G++ P+PIQ + PIA++G+ LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 31.1 bits (67), Expect = 0.68
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +3
Query: 444 NGLQRTDAHPSSRLADSYVWKDLVGVAQTGSGKTLAYILPAI 569
+G+ + + L++ KD + A+TG+GK++A++LPAI
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 31.1 bits (67), Expect = 0.68
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +3
Query: 444 NGLQRTDAHPSSRLADSYVWKDLVGVAQTGSGKTLAYILPAI 569
+G+ + + L++ KD + A+TG+GK++A++LPAI
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 31.1 bits (67), Expect = 0.68
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
PI+ F++ D V +GV GYK+P+ IQ + + G+
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGR 60
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 30.7 bits (66), Expect = 0.90
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 501 WKDLVGVAQTGSGKTLAYILPAI 569
+KD+ A TGSGKTLA+++P +
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLV 75
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 30.7 bits (66), Expect = 0.90
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPAK 543
FE+ + +G+ G+++P+PIQ + PIA++G LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 30.7 bits (66), Expect = 0.90
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPAK 543
FE+ + +G+ G+++P+PIQ + PIA++G LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 30.7 bits (66), Expect = 0.90
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA*PKRVPAK 543
FE+ + +G+ G+++P+PIQ + PIA++G LA K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 30.7 bits (66), Expect = 0.90
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHI 578
+D++ A TG+GKT+AY+ P I H+
Sbjct: 68 RDVLVNAPTGTGKTIAYLAPLIHHL 92
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 445 MGYKEPTPIQAQGWPIAMSGK 507
MG++ PT +QAQ P+ +SG+
Sbjct: 48 MGFEAPTLVQAQAIPVILSGR 68
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 495 YVWKDLVGVAQTGSGKTLAYILPAIVHINNQ 587
+ +D + AQTGSGKTL Y+L IN Q
Sbjct: 111 FTGRDCILHAQTGSGKTLTYLLLIFSLINPQ 141
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
K +V + TGSGKTLAY+LP +
Sbjct: 150 KSVVLGSHTGSGKTLAYLLPIV 171
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 206 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 90
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 507 DLVGVAQTGSGKTLAYILPAIVHI 578
D V + TGSGKTLAY+LP + I
Sbjct: 149 DAVIQSYTGSGKTLAYLLPILSEI 172
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQ 587
+D++ A+TG+GKTLA+ +P I + +
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +2
Query: 611 VPIALVLAPTRELAQQI 661
+P LVLAPTRELA+Q+
Sbjct: 180 LPKFLVLAPTRELAKQV 196
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 268 VGVKQIPIWASHVLPSREFFF 206
VGVK+I W + +LPSR+F F
Sbjct: 81 VGVKEIEGWTARLLPSRQFGF 101
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 620 ALVLAPTRELAQQI 661
ALVLAPTRELAQQI
Sbjct: 110 ALVLAPTRELAQQI 123
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQ 587
K + Q+GSGKTLAY++P I + +
Sbjct: 412 KSCIIADQSGSGKTLAYLVPVIQRLREE 439
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 620 ALVLAPTRELAQQI 661
ALVLAPTRELAQQI
Sbjct: 112 ALVLAPTRELAQQI 125
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 620 ALVLAPTRELAQQI 661
ALVLAPTRELAQQI
Sbjct: 110 ALVLAPTRELAQQI 123
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIVHINNQP 590
+D+ + TGSGKTL+Y LP + + ++P
Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLASRP 91
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 268 VGVKQIPIWASHVLPSREF 212
VGVK+I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = -3
Query: 247 IWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKF-GTTVSTAIIPITRH- 74
+W VL + F F K R ++S A R ++ VA + T+ ++ + H
Sbjct: 355 LWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHM 414
Query: 73 -DYFSDLVEDVYLNYGFFLTQGPP 5
YF + E ++ Y GPP
Sbjct: 415 STYFDRIQESLFTQYVIETLSGPP 438
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 268 VGVKQIPIWASHVLPSREF 212
VGVK+I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 268 VGVKQIPIWASHVLPSREF 212
VGVK+I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 277 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 432
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 277 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 432
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAIV 572
KD + +A TGSGK+L + +PA++
Sbjct: 184 KDCLVLAATGSGKSLCFQIPALL 206
>At3g48110.2 68416.m05246 aminoacyl-t-RNA synthetase, putative
similar to aminoacyl-t-RNA synthetase GI:2654226 from
[Arabidopsis thaliana]; contains Pfam profiles: PF02092
glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA
synthetase alpha subunit
Length = 1063
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 630 KTKAIGTITSPNRRVGYLCAQWLARCRPTFCRNPFGLRQLN 508
KT A G + + R+ L + A C+P+ +PFGLR+++
Sbjct: 825 KTDA-GMVLAIGDRLDSLVGLFAAGCQPSSTNDPFGLRRIS 864
>At3g48110.1 68416.m05245 aminoacyl-t-RNA synthetase, putative
similar to aminoacyl-t-RNA synthetase GI:2654226 from
[Arabidopsis thaliana]; contains Pfam profiles: PF02092
glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA
synthetase alpha subunit
Length = 1064
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 630 KTKAIGTITSPNRRVGYLCAQWLARCRPTFCRNPFGLRQLN 508
KT A G + + R+ L + A C+P+ +PFGLR+++
Sbjct: 825 KTDA-GMVLAIGDRLDSLVGLFAAGCQPSSTNDPFGLRRIS 864
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 423 CATRCKDNGLQRTDAHPSSRLADSYVWKDLVGVAQ 527
C T + GL+ + +P++RLA S V K+L+ + +
Sbjct: 966 CLTLVLEVGLRCCEEYPTNRLATSEVAKELISIRE 1000
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 504 KDLVGVAQTGSGKTLAYILPAI 569
K L+ A TGSGKT ++++P I
Sbjct: 11 KSLLASADTGSGKTASFLVPII 32
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 614 PIALVLAPTRELAQQI 661
P+A+VLAPTREL Q+
Sbjct: 50 PLAMVLAPTRELCVQV 65
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 462
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 463 TPIQAQGWPIAMS 501
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 87 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 233
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,103,604
Number of Sequences: 28952
Number of extensions: 303474
Number of successful extensions: 1028
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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