Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1126
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   2.9  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    25   6.6  

>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 159 ILHIALYNMIFTLISFPSCPRTVREPAMFILNLI*HK 269
           + H+  +   F L +F +CP+ V+  A+ I  L  HK
Sbjct: 196 LAHVKPFRNYFLLKNFDNCPQLVQRLAILIRKLWNHK 232


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 394 QVLHSCNRLVARVKLSSYMTFRPYGTLQLRINNN 495
           + LH C RL++    S+  TF PY      +N N
Sbjct: 7   KTLHVCLRLISLRNCSNTWTFVPYANSNRGLNIN 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,150
Number of Sequences: 5004
Number of extensions: 42278
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)