Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1126
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 528 SCNIHVTCFFLIIIYTKLQCPVWSESHI 445
           S + +V C  ++ IY +L C  +++ H+
Sbjct: 198 SISFYVPCIVMLGIYCRLYC--YAQKHV 223


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +2

Query: 308 KRCRFLGIH 334
           KRC+++GIH
Sbjct: 349 KRCKWMGIH 357


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 250 KINIAGSRTVRG 215
           K+N+AG R V+G
Sbjct: 603 KVNVAGCRCVKG 614


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +2

Query: 308 KRCRFLGIH 334
           KRC+++GIH
Sbjct: 349 KRCKWMGIH 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,524
Number of Sequences: 438
Number of extensions: 2865
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)