Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1125
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    28   0.90 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    26   3.6  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   4.8  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   4.8  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   4.8  

>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 516 RNSRLWGIIANPNPQHEG 463
           RNS LWGI+  P P  EG
Sbjct: 222 RNSYLWGILQPPEPSAEG 239


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 106 FPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRS 5
           FPVL QI+P  P L +  R F+  S+    SP++
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPKA 473


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 140 LSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATIL 15
           +SIL V+GP +  R+  +   G T  G L  +  + SF  +L
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWGLLSLLTPANSFDEML 255


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 209  DKSLHQLRTAMHHHPPNQERAVNLSILPV 123
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 175 TTTHRIKKELLICQSFRCPGLVRFPVLSQIKP 80
           T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,762
Number of Sequences: 5004
Number of extensions: 52499
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)