Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1125
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217... 29 2.8
01_06_0252 + 27889652-27892450 29 2.8
01_06_0144 - 26961473-26962072 29 3.7
07_01_0130 - 963856-965454 28 4.9
03_02_0200 - 6360682-6362517,6362599-6362670 28 6.5
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 28 6.5
01_06_1140 - 34836967-34836996,34837107-34838771 28 6.5
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 27 8.6
03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891... 27 8.6
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 27 8.6
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626... 24 9.0
>02_04_0451 +
23021139-23021269,23021366-23021498,23021594-23021789,
23023376-23023737,23024049-23024363
Length = 378
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = -2
Query: 200 LHQLRTAMHHHP--PNQERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSF 27
LH L T P P + + +ILP PG S + S G TP G + P F F
Sbjct: 313 LHYLSTLSPPEPLAPPRTFSSENAILPPESPGTSSLMASRGDLGDTPKGKMEDKPRGFFF 372
>01_06_0252 + 27889652-27892450
Length = 932
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = -3
Query: 595 IQSVVATGGVYKGQGRNQRELMTRAY*EFSFMGDNCKPQSPARRSFSGLP 446
++S T G++ G+G + R+Y +S +G + S ARRSFS LP
Sbjct: 62 LRSFRITSGIFSGEGA-ETLFSPRSY--YSIVGQHSFTDSFARRSFSLLP 108
>01_06_0144 - 26961473-26962072
Length = 199
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 149 LFLDSVGGGAWPFLVGGAICLVNSGNDRDSSLLN 250
L+ D V G FL G A C V G D+D+ L+
Sbjct: 82 LYADYVPGSLRRFLAGAADCFVGVGVDKDAERLS 115
>07_01_0130 - 963856-965454
Length = 532
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -2
Query: 197 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISR 99
H + + PPN NL +LP+ GP ++ +
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGK 227
>03_02_0200 - 6360682-6362517,6362599-6362670
Length = 635
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 539 RAYDSRLLGILV--YGG*LQTPIPSTKEFQRVA 447
R D RL G+L YG L TP TK F+RVA
Sbjct: 563 RGKDERLWGLLAECYGRGLITPNQMTKGFERVA 595
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 484 PQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTS 380
PQ P F GLP +G +H D ++A P S
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHPLLS 311
>01_06_1140 - 34836967-34836996,34837107-34838771
Length = 564
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = -1
Query: 348 SCGSKTPVPLRRILIRRQ*VARHEAAHT*ITSLFSRLESRSLPELTRQIAPPTKNGHAPP 169
+ G + +PL L+ +A AA T + SL++R + P L R +AP + +PP
Sbjct: 17 AAGPRLLLPLHAHLLVSGRLAASPAALTSLVSLYARAAA---PALHRHVAPLLLDRPSPP 73
Query: 168 P 166
P
Sbjct: 74 P 74
>05_03_0653 + 16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 337 EDAGPSKKNFNTSSVSCATRGRAHLNNEPI*QARVSIVTG 218
E PS NF S+ S L++E + QA V+IVTG
Sbjct: 1199 ESQVPSFVNFGVSNTSQEAMDSDELDSEALFQAYVNIVTG 1238
>03_05_0741 +
27287414-27287479,27287887-27287946,27288949-27289112,
27289158-27289241,27290115-27290178,27291181-27291334,
27291605-27291675,27292138-27292242,27292734-27292826,
27293672-27293746,27294114-27294199,27294293-27294499,
27294585-27294684,27294765-27294835,27294960-27295041,
27295920-27296078,27296480-27296533,27296775-27296817,
27297630-27297712,27298569-27298631,27298720-27298794,
27299620-27299745,27300267-27300499,27300611-27300655,
27300953-27301019,27302095-27302166,27302276-27302520,
27302598-27302655,27302743-27302910,27303224-27303298,
27303412-27303669
Length = 1101
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 258 TSLFSRLESRSLPELTRQIAPPTKNG 181
T L S ++ + L + TRQ+ PPT++G
Sbjct: 444 TKLKSAVQLQDLLDATRQLVPPTRSG 469
>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 516 RNSRLWGIIANPNPQHEGVSAGCPGL*ARENML 418
R LW +++ P P+++ + G PG R +L
Sbjct: 1108 REPFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140
>03_02_0649 -
10162202-10162366,10162455-10162533,10162614-10162670,
10162741-10162847,10163365-10163580,10163690-10163734,
10164100-10164258,10164714-10164818,10164902-10165084,
10165490-10165546,10165625-10165720,10166970-10167104,
10167188-10167262,10167380-10167479,10167682-10167842,
10167921-10168068,10168706-10169111,10169794-10169860,
10169953-10170162,10170570-10170711,10170809-10170870,
10170965-10171037,10171876-10171985,10172087-10172227
Length = 1032
Score = 23.8 bits (49), Expect(2) = 9.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 299 RRIKILLRGTGVFEPHEIEQ*QVCDAL 379
RRI +LL G FE + Q +VCDAL
Sbjct: 528 RRIALLL-GQCAFEIKGVIQKEVCDAL 553
Score = 21.8 bits (44), Expect(2) = 9.0
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 464 PSCWGLGFAIIPHKREF 514
P+CW + F +I +EF
Sbjct: 591 PTCWAMCFKLIGAVQEF 607
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,253,737
Number of Sequences: 37544
Number of extensions: 451330
Number of successful extensions: 1144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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