Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1125
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.2  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   9.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = -1

Query: 318 RRILIRRQ*VARHEAAHT*ITSLFSRLESRSLPELTRQIAPPTKNGHAPPPTESRKS 148
           RRI++  +    H  AH     +   ++      + RQ+    + GH  PP +  +S
Sbjct: 230 RRIVLEERRAQSHLEAHC-YFDIEPTVQQHQPVTVNRQLNSDVQPGHGSPPVKQHRS 285


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 414 ESACSPWPRGPGNPLKLLRA 473
           + + SP PR P NP++ L+A
Sbjct: 13  DRSTSPLPRKPVNPVQELKA 32


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 503 KREFLVSASHKLALITSLPFVHTARRYYRLN 595
           K+E+ +    KL +I  L F+   R  YR++
Sbjct: 38  KKEYPLVMDTKLKIIEILQFILDVRLDYRIS 68


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 503 KREFLVSASHKLALITSLPFVHTARRYYRLN 595
           K+E+ +    KL +I  L F+   R  YR++
Sbjct: 6   KKEYPLVMDTKLKIIEILQFILDVRLDYRIS 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,972
Number of Sequences: 438
Number of extensions: 3919
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)