Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1125
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38360.2 68417.m05424 expressed protein contains Pfam profile...    31   0.58 
At5g53740.1 68418.m06678 hypothetical protein                          28   4.1  
At4g00990.1 68417.m00133 transcription factor jumonji (jmjC) dom...    28   5.4  
At3g13784.1 68416.m01741 beta-fructosidase, putative / beta-fruc...    28   5.4  
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot...    28   5.4  
At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-contain...    27   9.5  

>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 485

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 496 DNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGIT 368
           D+C   SP+RR   G+  PL  G  +DS      + R   G T
Sbjct: 415 DSCMSSSPSRRVIRGIDDPLLNGSFSDSGVTRTKKHRRKSGYT 457


>At5g53740.1 68418.m06678 hypothetical protein 
          Length = 275

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/63 (26%), Positives = 24/63 (38%)
 Frame = +2

Query: 401 RYTEGISMFSLA*RPGQPAETPSCWGLGFAIIPHKREFLVSASHKLALITSLPFVHTARR 580
           R  EG+        PG P +   CW     I   K E   S      L+++ P +HT   
Sbjct: 139 RQAEGLVTPQFLSIPGSPIDLTKCWSSLLNIQGCKIEIFKSVFKWNVLLSTQPLLHTNES 198

Query: 581 YYR 589
            Y+
Sbjct: 199 NYK 201


>At4g00990.1 68417.m00133 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 840

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 41  KELTEGHHQEWSLRLNLTQHGKSHQARTPEG 133
           KEL+EG HQE   + N    GK ++ R P G
Sbjct: 238 KELSEGFHQERDGKKN--AEGKGYECRIPAG 266


>At3g13784.1 68416.m01741 beta-fructosidase, putative /
           beta-fructofuranosidase, putative / cell wall invertase,
           putative similar to beta-fructofuranosidase GI:402740
           from [Arabidopsis thaliana]
          Length = 569

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 365 VCDALRCPGPHARYTEGISMFSL--A*RPGQPAETPSCWGLGFAIIPHKREFLV 520
           V D  +    HA  T+ I+  +L  A RP +P++   CW     I+P+ +  ++
Sbjct: 77  VMDVNKTVWGHATSTDLINWITLSPAIRPSRPSDINGCWSGSVTILPNGKPVIL 130


>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 652

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 230 DRYRN*PDKSLHQLRTAMHHHPPNQERAVNLSILP 126
           D  R    K LH L +  H H PN +  +NL   P
Sbjct: 96  DERREKKHKLLHGLNSHSHRHSPNSQSDLNLDQTP 130


>At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-containing
            protein contains Pfam profile PF00169: PH domain
          Length = 1322

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/84 (23%), Positives = 39/84 (46%)
 Frame = +3

Query: 81   GLI*LNTGNLTRPGHRKD*QINSSFLIRWVVVHGRS*LVERFVWLIPVTIETLAC*IGSL 260
            GL+ ++  N+T+P +     ++S    + V+ H  S   +     + VT+ TL+      
Sbjct: 952  GLLPVDNKNITKPSNETTESLDSFVKAQIVIYHQTSPQYKNIDNQVMVTLATLS------ 1005

Query: 261  FRCARPRVAQLTDDVLKFFLEGPA 332
            F C RP +  + + V    +E P+
Sbjct: 1006 FFCRRPTILAILEFVNAINVEDPS 1029


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,830
Number of Sequences: 28952
Number of extensions: 314755
Number of successful extensions: 709
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)