Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1124
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 34 0.12
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 33 0.16
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187... 31 1.1
04_03_0009 + 9313227-9313533,9314182-9314405,9315336-9315542 30 1.9
09_01_0184 + 2693576-2693578,2694157-2694952,2695169-2695249,269... 29 2.6
05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238 29 3.4
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 29 3.4
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 29 4.5
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435... 29 4.5
12_02_0579 + 20764626-20765123,20765135-20766064,20767181-207672... 28 5.9
06_03_1037 - 27058002-27058082,27058856-27059041,27060033-270601... 28 5.9
09_02_0212 + 5820866-5821031,5821172-5821224,5821512-5821639,582... 28 7.8
01_01_0201 + 1746088-1747086,1748735-1748806,1750106-1750168,175... 28 7.8
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +2
Query: 311 KIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEIEKQVILE 490
+++ E PPAN+ + P+ + PQ ++L+ +S NL T +H E+Q+ +E
Sbjct: 454 EVVTNEEPPANDKPKRGRGRPRKQKPQDGLELTEKKS-TSNLS-TDNAYDHPAERQMDME 511
Query: 491 SSDEDEL 511
+ D L
Sbjct: 512 FDEFDGL 518
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 308 TKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVI 457
TK IQK P T A+ P+P+A P+ S+ ++ Q+P L + I
Sbjct: 147 TKDIQKPDEPQPGETQAESPLPEALQPESSLPVTQEQTPGNPLSGLLNAI 196
>01_06_0006 -
25517892-25517935,25518156-25518276,25518598-25518733,
25519189-25519280,25519358-25519426,25519710-25519821,
25519897-25520015,25520302-25520355,25520811-25520891,
25520968-25521051,25521124-25521315,25521633-25521746,
25521832-25521978,25522066-25522302,25522762-25522810,
25522894-25523027,25523124-25523324,25523532-25523701,
25523773-25523875,25524198-25524361,25525015-25525055,
25525144-25525187
Length = 835
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 198 DETQTKKNENNQNAAQIIEMPRAALFVVTGAPV 296
DE KN N +NAA + + R V+TG PV
Sbjct: 344 DEGHVLKNPNTKNAAALKSLSRGQTVVLTGTPV 376
>04_03_0009 + 9313227-9313533,9314182-9314405,9315336-9315542
Length = 245
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 278 RYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENP 388
RYW+T S+T + E P + A P ENP
Sbjct: 44 RYWKTPVKSSTPAKKLEEPAQRKPSPAPSPPETVENP 80
>09_01_0184 +
2693576-2693578,2694157-2694952,2695169-2695249,
2695454-2695793,2695799-2696258,2696404-2696526,
2696532-2697266
Length = 845
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +2
Query: 278 RYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIE 451
RYWRT S + E P ++A KP + N S ++ + + K IE
Sbjct: 529 RYWRTPVKSPVPAKKLEQPAQKKPSSAPKPKKERTNMDASKRAAYVKKIHEKTKEEIE 586
>05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238
Length = 490
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 526 PPKPTITIESSDEDELEVIQSPSPA 600
PP PT T++ DEDE E I P A
Sbjct: 100 PPNPTPTLDLWDEDEFEGIPVPEAA 124
>04_04_1704 -
35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 150 NDHDLEGRLYAMLHYADETQTKKNENNQNAAQIIEMPRAALFVVTGAPV 296
ND D E DE KN Q A + E+P A V++G P+
Sbjct: 401 NDFDDEEETLWNYVILDEGHIIKNPKTQRAQSLFEIPCAHRIVISGTPI 449
>06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 28.7 bits (61), Expect = 4.5
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Frame = +2
Query: 209 DQEKRK*PKCSSDYRNAPRSTVRRYWRTSADSNTKIIQKESPP---ANNNTAAKKPV--- 370
D+ P + N P+S++ +AD N + +E+PP A+ T ++ +
Sbjct: 1039 DKPSESTPDTETLPHNTPKSSISI--SEAADGN---VSEEAPPQSSASIETPSESAIAVE 1093
Query: 371 -PKAENP---QPSVDLSFFQSPPQNLKRTIEVIEHEIEKQVILESSDEDE 508
PK ++ +PS D S + PPQ+ ++E E+ I + ++S+EDE
Sbjct: 1094 EPKHDDEASIKPSEDSSALEEPPQDDSASVEPSENTI---TLEKASEEDE 1140
>04_04_0179 -
23342764-23342973,23343185-23343340,23343535-23343593,
23344150-23344226,23344309-23344587,23344800-23344885,
23344960-23345027,23345721-23345904,23346071-23346204,
23346776-23347039,23347613-23347677,23347833-23348407,
23348501-23348680,23348765-23348928,23349008-23349261,
23349405-23349562,23349808-23349948,23350176-23350282,
23350651-23350737,23350812-23350901,23350974-23351055,
23351370-23351561,23351748-23351816,23351959-23352294,
23352694-23352837,23352963-23353126,23353817-23353883
Length = 1463
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 239 SSDYRNAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAAK 361
S + R+A S +T DS TK QKE AN NT +
Sbjct: 849 SEENRSAKPSVRESMTKTRLDSATKPPQKEEQTANKNTGTR 889
>12_02_0579 +
20764626-20765123,20765135-20766064,20767181-20767275,
20767342-20767384,20767869-20768231
Length = 642
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 514 EVALPPKPTITIESSDEDELEVIQSPSPAKES*PNLSL 627
E+ LPP + E ++D+ EV++ P+ A+ +L+L
Sbjct: 253 ELELPPAAAVAEEEEEDDDDEVVELPATARAVAMSLAL 290
>06_03_1037 -
27058002-27058082,27058856-27059041,27060033-27060176,
27060284-27061183
Length = 436
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 329 SPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTI 448
SPP A K+PVP P+ + S + PP RT+
Sbjct: 101 SPPPLGEVAPKQPVPAKLFDAPAAEASSSEPPPPPPPRTL 140
>09_02_0212 +
5820866-5821031,5821172-5821224,5821512-5821639,
5821728-5821833,5821998-5822132,5822211-5822262,
5822383-5822447,5823984-5824090,5824596-5824792,
5825145-5825260,5825368-5825453,5825525-5825597,
5826886-5826977,5827069-5827207,5827275-5827369,
5827804-5827978,5828345-5828491
Length = 643
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 142 RNLTIMIWR-AGCMQCCIMQTKHRPRKTKITKMQLRLSKCPAQHCSSLLAHQCRFQH*NN 318
+NLTI R M +QTKH P + ++ +S+ Q+ L H+ ++
Sbjct: 272 KNLTIQFARRTDVMPPIPLQTKHHPSAVDLLLIKRLISETTKQNLLQFLQHEFVNISKSH 331
Query: 319 SERVATCQQQYCSQKTSTKS 378
+ER+ S KT+ KS
Sbjct: 332 AERLIGEMGPDFSAKTTVKS 351
>01_01_0201 +
1746088-1747086,1748735-1748806,1750106-1750168,
1750355-1750489,1750604-1750669
Length = 444
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 200 RNTDQEKRK*PKCSSDYRNAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKA 379
RN +EKR+ SS +P S+ S+ S+T P ++ A KP PK
Sbjct: 160 RNFAEEKRRRGVASSA---SPASSATPTPTASSSSSTSAAPFAHPSPSSVLEATKPAPKP 216
Query: 380 ENP 388
E+P
Sbjct: 217 ESP 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,691,618
Number of Sequences: 37544
Number of extensions: 411434
Number of successful extensions: 1418
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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