Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1124
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6094| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.16 
SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_20397| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)                  29   3.4  
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 29   3.4  
SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)          28   6.0  
SB_56906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_4633| Best HMM Match : IncA (HMM E-Value=0.79)                      28   6.0  
SB_43315| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_57349| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              28   7.9  
SB_23391| Best HMM Match : 7tm_1 (HMM E-Value=1e-24)                   28   7.9  
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)            28   7.9  

>SB_6094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
 Frame = +2

Query: 233 KCSSDYRNAPR---STVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVD 403
           K  S   NA R   S+    W  + +SN   +   S       +  +P P+A       D
Sbjct: 13  KKRSSSNNAKRRRFSSSNEDWPAAHNSNDSTVSDSSEDYTPRVSRPRPQPRARARAAPAD 72

Query: 404 LSFFQSPPQNLKRTIEVIEHEIEKQVILESSDEDE 508
            +   SP +N           + KQ ILES DE E
Sbjct: 73  TTPKPSPARNRSTPTPKTPAALLKQQILESEDESE 107


>SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +2

Query: 239 SSDYRNAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQ 418
           ++D R   R T R+       S++ + +  SPP +++  A+KP   ++   PS ++S   
Sbjct: 174 TADNRAQNRDTPRQAPAAKTHSSSTVPRSGSPPVSSSRPAQKPT--SQTALPSTEISGTG 231

Query: 419 SPPQNLK 439
           S P++ K
Sbjct: 232 SLPKSTK 238


>SB_20397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 278 DEQCCAGHFDNLSCILVIFV 219
           +E+ C+ HFDN  CI++I +
Sbjct: 35  NEEVCSDHFDNTICIIIIII 54


>SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1123

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +2

Query: 332 PPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNL----KRTIEVIEHEIEKQVILESSD 499
           P + N     KP     N + ++DL +       L    K+ +  I H++E+ ++ +   
Sbjct: 113 PESENPEPTSKPDFTQTNAKWTIDLVYLAKGKGELNMFTKKRLRAI-HKLEQNIMRQEGM 171

Query: 500 EDELWKWLY 526
           +D  WKW Y
Sbjct: 172 QDFCWKWNY 180


>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
          Length = 1420

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 254 FDNLSCILVIFVFLGLCFVCIMQHCIQPALQIM 156
           F  L C   I VF G C VC + H + P + +M
Sbjct: 368 FSALKCTQTIAVFQGTCTVC-LTHSVCPVIHLM 399


>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 299 DSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVD--LSFFQSPPQNLKRTIEVIEHEIE 472
           ++ T   + E+P        + P+ +AE+P   V+  +   ++P + ++ T+E +E  +E
Sbjct: 2   EARTPAEETEAPVEEAEALGETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVEAPME 61

Query: 473 K 475
           +
Sbjct: 62  E 62


>SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 494 LIPGSPVFQFHARLPQWFFLNFGAEIGKRISQQK 393
           L P   +    ARLP WF+ + G++  +R+ + K
Sbjct: 93  LPPRKSIHSILARLPPWFYFDVGSDQNRRVVRAK 126


>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 795

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 326 ESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQ 430
           ESPP++ +     P   +  P+PS   S   +PPQ
Sbjct: 737 ESPPSSKHPPTVSPSSSSAPPRPSTPPSVSSAPPQ 771


>SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)
          Length = 779

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 314 IIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQ 430
           ++ K SPPA  NT+ +K V   E+ +  + ++  Q  PQ
Sbjct: 28  LLPKRSPPAIENTSPQKRVRLCEHDRNFIHVNLIQILPQ 66


>SB_56906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -1

Query: 204 FRLHNAALHTTCPPNHD--R*VPRP---CFSCELKQNKTSHELN 88
           F+LH+  +HT    +H+  R   R    CFS   KQN++  ELN
Sbjct: 51  FQLHDHVIHTKVTTDHEECRESCRKNDACFSINFKQNESQCELN 94


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +2

Query: 299  DSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLS-----FFQSPPQNLKRTIEVIEH 463
            +++  +++ +S    +N     P+     P PSVD+S      F +PPQ+L      + H
Sbjct: 1397 NTHPALVRADSSEEPSNAPKHSPLGSRHQPPPSVDMSQPPPPAFAAPPQHLPHLGGAVTH 1456


>SB_4633| Best HMM Match : IncA (HMM E-Value=0.79)
          Length = 413

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +2

Query: 239 SSDYRNAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQ 418
           SS++ ++ R  +R       D   K ++   PPAN   + K    +A+ P P  +++ +Q
Sbjct: 190 SSEFVSSIRIWIRDDRGRRVDFKDKPVRLCPPPANAYRSGKHRRRRAKFPTPDNEITHYQ 249

Query: 419 SPPQNLKRTIEV 454
              +  KR   V
Sbjct: 250 QVRKKYKRAFAV 261


>SB_43315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 916

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/46 (26%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +3

Query: 132 NMDEELNDHD-LEGRLYAMLHYADETQTKKNENNQNAAQIIEMPRA 266
           ++++ L++ D + G+L+ ++   +E  ++K  N +  AQ+++ PRA
Sbjct: 73  DLEKFLDEGDEMRGKLHKIVFKIEELLSQKTMNTRPEAQLLQSPRA 118


>SB_57349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 240 LHFGYFRFSWSVFRLHNAALHTTCPPN 160
           LHF    F+    + H    +TTCPPN
Sbjct: 43  LHFNLMIFAMGTPQFHCDVTNTTCPPN 69


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +2

Query: 245  DYRNAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSP 424
            DY +     VRR  R +  +N     K  P   ++   +K  P +  P    DLS FQ  
Sbjct: 1112 DYVDEEGRRVRRLVRRTVVTNETFTSKSVPAKADSMPVQKLQPFSIQPVKKSDLSTFQIT 1171

Query: 425  P 427
            P
Sbjct: 1172 P 1172


>SB_23391| Best HMM Match : 7tm_1 (HMM E-Value=1e-24)
          Length = 540

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -2

Query: 446 WFFLNFGAEIGKRISQQKAGDSQLLVLVFWLQYCCW 339
           W      A +G R ++++A  ++ L+ +    +CCW
Sbjct: 265 WTVRKSSAAVGSRNAKKEAALARKLMAIIMTDFCCW 300


>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
          Length = 647

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 356 AKKPVPKAENPQPSVDLSFFQSPPQNLKRTIE-VIEHEIEKQV 481
           A+K  P+AE          +Q+P Q  +R +E  I+H +EK +
Sbjct: 516 ARKCEPQAEKIYEPQSKKIYQAPEQKTQRLLEKQIQHPVEKAI 558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,362,420
Number of Sequences: 59808
Number of extensions: 462849
Number of successful extensions: 1406
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)