Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1124
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    22   4.7  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.1  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 461 HEIEKQVILESSDEDE 508
           HEI +Q + +++DEDE
Sbjct: 93  HEIIEQCVSKAADEDE 108


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 461 HEIEKQVILESSDEDE 508
           HEI +Q + +++DEDE
Sbjct: 93  HEIIEQCVSKAADEDE 108


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 326 ESPPANNNTAAKKPVPKAENPQPSVDLSFFQS 421
           +S  A  +T+   P   + +P PS   SFF S
Sbjct: 71  DSAAAITSTSPSYPGGGSSSPSPSSPSSFFSS 102


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +2

Query: 311 KIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEIEKQVILE 490
           +I    +    N  +  +PV   ++   S DLS F SP    +  +  IE +  + ++ +
Sbjct: 9   QITNSTTMSVKNEISTVEPVDPVKSLVCSPDLSVFTSPACGSETPLTNIEEKTYQCLLCQ 68

Query: 491 SS-DEDELWK 517
            + D+  L++
Sbjct: 69  KAFDQKNLYQ 78


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 362 KPVPKAENPQPSVDLSFFQSPP 427
           KP+P  +NP+ + +L +  + P
Sbjct: 307 KPLPMVDNPESTGNLVYIYNNP 328


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 664 TEGTGLADTHLSPET 620
           T G+G  DT +SP+T
Sbjct: 334 TPGSGDGDTEISPQT 348


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 245 LSCILVIFVFLGLCFVCIMQHCIQPA 168
           +S +  I V+LG CFV +    ++ A
Sbjct: 277 ISYVKSIDVYLGTCFVMVFASLLEYA 302


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 245 LSCILVIFVFLGLCFVCIMQHCIQPA 168
           +S +  I V+LG CFV +    ++ A
Sbjct: 277 ISYVKSIDVYLGTCFVMVFASLLEYA 302


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 245 LSCILVIFVFLGLCFVCIMQHCIQPA 168
           +S +  I V+LG CFV +    ++ A
Sbjct: 216 ISYVKSIDVYLGTCFVMVFASLLEYA 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,830
Number of Sequences: 438
Number of extensions: 4771
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)