Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1124
(675 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A) 32 0.40
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id... 31 0.53
At5g63950.1 68418.m08030 SNF2 domain-containing protein / helica... 31 0.70
At5g49530.1 68418.m06130 SIN-like family protein low similarity ... 31 0.93
At2g27140.1 68415.m03261 heat shock family protein contains simi... 31 0.93
At5g53150.1 68418.m06607 DNAJ heat shock N-terminal domain-conta... 29 2.8
At4g19120.2 68417.m02822 early-responsive to dehydration stress ... 29 2.8
At4g19120.1 68417.m02821 early-responsive to dehydration stress ... 29 2.8
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 29 3.8
At4g31270.1 68417.m04438 expressed protein 29 3.8
At3g51510.1 68416.m05641 expressed protein 29 3.8
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 3.8
At2g31820.1 68415.m03886 ankyrin repeat family protein contains ... 28 5.0
At1g42460.1 68414.m04896 Ulp1 protease family protein contains P... 28 5.0
At2g41150.2 68415.m05083 expressed protein an isoform contains a... 28 6.6
At2g41150.1 68415.m05082 expressed protein an isoform contains a... 28 6.6
At2g18470.1 68415.m02151 protein kinase family protein contains ... 28 6.6
At1g53260.1 68414.m06035 hypothetical protein low similarity to ... 28 6.6
At2g40475.1 68415.m04995 expressed protein 27 8.7
At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta... 27 8.7
At1g04160.1 68414.m00406 myosin family protein contains Pfam pro... 27 8.7
>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
Length = 143
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1
Query: 523 LPPKPTITIESSDEDELEVIQSPSPAKES*PNLSLEKDV 639
L K T+TI+++D+D+ V+ + K++ P LS+ K +
Sbjct: 51 LANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSI 89
>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
identical to GI:11993463
Length = 961
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Frame = +3
Query: 147 LNDHDLEGRLYAMLHYADETQTK-KNENNQNAAQIIEMPRAAL--FVVTGAPVPIPTLK* 317
+ DH +GR A +H ADE+++K + ++++ ++I + R A ++ AP P+ T+
Sbjct: 791 VKDHSSDGRKAARIHSADESESKGTQDEDEDSEKVITVKRDATKKVLINKAP-PVLTIHL 849
Query: 318 FRKSRHL 338
R S+ L
Sbjct: 850 KRFSQDL 856
>At5g63950.1 68418.m08030 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1090
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 138 DEELNDHDLEGRLYAMLHYADETQTKKNENNQNAAQIIEMPRAALFVVTGAPV 296
D ++ D +G + + DE KN N Q A ++E+P + +++G P+
Sbjct: 496 DHYTDEDDEDGNKWDYM-ILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPI 547
>At5g49530.1 68418.m06130 SIN-like family protein low similarity to
Sex-lethal interactor [Drosophila melanogaster]
GI:6049274; contains Pfam profile PF04801: Sin-like
protein conserved region
Length = 689
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +2
Query: 299 DSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEIEKQ 478
D K + K A KP PK P+P+ D Q PPQ+ ++ EH+++ +
Sbjct: 6 DDKPKEVTKTRRFAPGRAGKSKPKPK---PEPTADKPV-QPPPQSQTESVSKTEHDVDAK 61
Query: 479 VI 484
+
Sbjct: 62 FV 63
>At2g27140.1 68415.m03261 heat shock family protein contains
similarity to Swiss-Prot:P27397 18.0 kDa class I heat
shock protein [Daucus carota]
Length = 224
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 514 EVALPPKPTITIESSDEDELEVIQSPSPAKES 609
E PPK T E+ E + E IQSP PA+E+
Sbjct: 134 EKVQPPKETRENETELEKQAEKIQSPKPAREN 165
>At5g53150.1 68418.m06607 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 755
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 344 NNTAAKKPVPKAENPQPS-VDLSFFQSPPQNLKRTIEVIEHEIE--KQVILESSD 499
N T +K KA + + S V+ S S ++R++EVI HE + K++++ SD
Sbjct: 429 NPTEGEKNSTKAMSSKASEVERSKMSSTANEVERSVEVIPHESDEVKEIVVPDSD 483
>At4g19120.2 68417.m02822 early-responsive to dehydration stress
protein (ERD3) identical to ERD3 protein [Arabidopsis
thaliana] GI:15320410; contains Pfam profile PF03141:
Putative methyltransferase; identical to cDNA ERD3
GI:15320409
Length = 600
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = +2
Query: 233 KCSSDYRNAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENP 388
+CSSDY++ T R W+ +++ PP + P P P
Sbjct: 72 ECSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDRKQCLVPPPDGYKP 123
>At4g19120.1 68417.m02821 early-responsive to dehydration stress
protein (ERD3) identical to ERD3 protein [Arabidopsis
thaliana] GI:15320410; contains Pfam profile PF03141:
Putative methyltransferase; identical to cDNA ERD3
GI:15320409
Length = 600
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = +2
Query: 233 KCSSDYRNAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENP 388
+CSSDY++ T R W+ +++ PP + P P P
Sbjct: 72 ECSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDRKQCLVPPPDGYKP 123
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2
{Saccharomyces cerevisiae}; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 682
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 329 SPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHE-IEKQVILESSDED 505
+PP T +K P K + PP K+ EV+E E +E + + SDED
Sbjct: 17 TPPTKQLTKSKTPPMKPQTSMLKKGAKSQNKPPLK-KQKKEVVEEEPLEDYEVTDDSDED 75
Query: 506 E 508
+
Sbjct: 76 D 76
>At4g31270.1 68417.m04438 expressed protein
Length = 294
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Frame = +2
Query: 179 CNAALCRRNTDQEKRK*PKCSSDYRNAP------RSTVRRYWRTSAD 301
CNA RN +Q +RK SDY R T R YW S+D
Sbjct: 55 CNALDVSRNLNQCRRKWDSLMSDYNQIKKWESQYRGTGRSYWSLSSD 101
>At3g51510.1 68416.m05641 expressed protein
Length = 181
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 263 RSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENP-QPSVDLSFFQSP 424
RSTVRR T+A +K KES P+ N + +P P A N + S F+ P
Sbjct: 49 RSTVRRLVVTAATEGSK-KSKESEPSWANPDSDEPPPWARNEGRSSTSQESFEVP 102
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Frame = +2
Query: 197 RRNTDQEKRK*PKCSSDYRNAPRSTVRRYWRTSADSN------TKIIQKESPPANNNTAA 358
RR+ +R+ S +R+ RS +RR+ R + + ++ + SPPA +
Sbjct: 267 RRSLSPRRRR---IHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSP 323
Query: 359 KKPVPKAENPQPSVDLSFFQSPPQNLKRT 445
P + +P P +PP +R+
Sbjct: 324 SPPARRRRSPSPPARRHRSPTPPARQRRS 352
>At2g31820.1 68415.m03886 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 662
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 401 DLSFFQSPPQNLKRTIEVIEHEIEKQV 481
DL Q+P + LK+T+ I+HE++ Q+
Sbjct: 423 DLGKPQNPAKQLKQTVSDIKHEVQSQL 449
>At1g42460.1 68414.m04896 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 762
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +2
Query: 269 TVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQP 394
T + AD NT + PP N A P+P +P P
Sbjct: 292 TQAEHTAADADGNTNDVSSPDPPNKNAEADVNPIPPPCHPVP 333
>At2g41150.2 68415.m05083 expressed protein an isoform contains a GA
donor splice site supported by FL-cDNA alignment which
truncates the ORF.
Length = 401
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = -2
Query: 329 TLSELF*CW-NRHWCASNDEQCCAG--HFDN-LSCILVIFVFLGLCFVCIMQHCIQP 171
+LS+ + W NR C + + CAG H ++ L C L +FL FV + CI P
Sbjct: 62 SLSDKYLYWGNRIDCPGKNCETCAGLGHQESSLRCALEEAMFLNRTFVMPSRMCINP 118
>At2g41150.1 68415.m05082 expressed protein an isoform contains a GA
donor splice site supported by FL-cDNA alignment which
truncates the ORF.
Length = 259
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = -2
Query: 329 TLSELF*CW-NRHWCASNDEQCCAG--HFDN-LSCILVIFVFLGLCFVCIMQHCIQP 171
+LS+ + W NR C + + CAG H ++ L C L +FL FV + CI P
Sbjct: 65 SLSDKYLYWGNRIDCPGKNCETCAGLGHQESSLRCALEEAMFLNRTFVMPSRMCINP 121
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +2
Query: 308 TKIIQKESPPAN-NNTAAKKPVPKAENPQPSVDLSFFQSPPQN 433
T SPP+N N+T + P P +P P S PP +
Sbjct: 11 TNSTSSPSPPSNTNSTTSSPPAPSPPSPTPPQGDSSSSPPPDS 53
>At1g53260.1 68414.m06035 hypothetical protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 358
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = +2
Query: 230 PKCSSDYRNAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLS 409
P + +Y+ P + + ++ SN + PP N N + + P P P+++ S
Sbjct: 235 PNMNQNYQGPPAPNMNQNYQGPPPSNMGQNYQGPPPPNMNQSYQGP------PPPNMNQS 288
Query: 410 FFQSPPQNL 436
+ PP N+
Sbjct: 289 YQGPPPSNM 297
>At2g40475.1 68415.m04995 expressed protein
Length = 193
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 219 FSWSVFRLHNAALHTTC-PPNHDR*VPRPCFSCELKQNKTSHELNIIAN 76
FSWS +++ +++ PP+ PR C+SC K E I+++
Sbjct: 106 FSWSSASSSSSSSYSSSSPPSKVEHRPRKCYSCSRSYVKEDDEEEIVSS 154
>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
ontains Pfam profile PF00032: Cytochrome
b(C-terminal)/b6/petD; 99% identical to apocytochrome B
(GI:6851014), cytochrome b (GI:402962), and Cytochrome b
(Swiss-Prot:P42792) [Arabidopsis thaliana]
Length = 393
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 506 HPHRLIPGSPVFQFHARLPQWFFLNFGAEIGKRISQQKAGDSQLLVLVF 360
HP IP +P+ +P+W+FL A + R KAG + VF
Sbjct: 259 HPDNYIPANPMSTPPHIVPEWYFLPIHAIL--RSIPDKAGGVAAIAPVF 305
>At1g04160.1 68414.m00406 myosin family protein contains Pfam
profiles: PF02736 myosin N-terminal SH3-like domain,
PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif, PF01843: DIL domain
Length = 1500
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 281 YWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSP 424
YW T+ + ++QK PA A K P + + LSF SP
Sbjct: 1167 YWLTNTSALLFLLQKSLKPAGAGATASKKPPITTSLFGRMALSFRSSP 1214
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,156,441
Number of Sequences: 28952
Number of extensions: 334110
Number of successful extensions: 1101
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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