Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1123
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0EF46 Cluster: Chromosome undetermined scaffold_92, wh...    38   0.28 
UniRef50_Q4P8E9 Cluster: Putative uncharacterized protein; n=1; ...    37   0.48 

>UniRef50_A0EF46 Cluster: Chromosome undetermined scaffold_92, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_92,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2467

 Score = 37.5 bits (83), Expect = 0.28
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 333 SELICFMCIYTDFFSCIKCSKLRNVLISNRLC 238
           +E +C  C   DF+SCI C   RN +++N+LC
Sbjct: 452 TEGLCNECEQQDFYSCISCKSGRNRILANKLC 483


>UniRef50_Q4P8E9 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 489

 Score = 36.7 bits (81), Expect = 0.48
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 42  HSPPDVKSSTT*IPHPL*DISSKISV*LTRLP--HHSNRNALLLHGRNRRGGD 194
           H+ PDV S +      + D S K+ V  TR P   H+ +  +++HGRNR G D
Sbjct: 63  HTQPDVPSGSRLTSIDVGDSSHKLGVYWTRNPSNRHAKQAFVMIHGRNRNGAD 115


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,272,935
Number of Sequences: 1657284
Number of extensions: 10475905
Number of successful extensions: 19353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19353
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)