Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1123
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0489 - 18686806-18687681,18687816-18687830                       28   5.6  
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330...    28   7.4  
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022           27   9.8  

>07_03_0489 - 18686806-18687681,18687816-18687830
          Length = 296

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 285 IKCSKLRNVLISNRLCCSINFNFM*VRTGRYHHPAYFCR 169
           +K +++R V+I +  CC    + + + T  Y+ P   CR
Sbjct: 85  LKQNEVRKVIIRSSSCCPDGDHLVAIMTDHYNFPLILCR 123


>12_01_0418 -
           3304741-3304904,3305579-3305762,3307254-3307347,
           3308530-3308882,3309140-3309274,3309354-3309392,
           3309587-3309652,3309739-3309834,3310291-3310527,
           3310602-3310722,3310854-3310889,3313062-3313159,
           3313298-3313591,3313842-3313904,3314280-3314438,
           3314557-3314655
          Length = 745

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 130 GCPTIQTETHYCFTAEIGGVVIPTRADSHKIKIN 231
           GC ++  +T  CF+AEI  V +        +KIN
Sbjct: 450 GCLSVHLDTPQCFSAEIYAVDLNVAGAQEDLKIN 483


>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
          Length = 587

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 208 PHG*VSPPRLFLP*SSNAFRFEWWGSRVNYTEILELISQSGWGIY 74
           P G VSP  L  P S+  FR   W + V+ T  +  +S+   G+Y
Sbjct: 385 PSGDVSPEELQGPPSALPFRVLPWDAEVHATLFVHRVSELPKGLY 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,847
Number of Sequences: 37544
Number of extensions: 276487
Number of successful extensions: 467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)