Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1122
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    27   1.8  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   1.8  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    26   2.4  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   3.1  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    25   5.5  
SPAPB2B4.07 |||ubiquitin family protein, human UBTD1 homolog|Sch...    25   7.3  

>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 272 KTYRIFLQSEDYAELLHNMLAKMVKYGESLEHYYYAKI 159
           K+Y IFL    Y E+    L  +  Y  SL  YYY  +
Sbjct: 278 KSY-IFLGDPRYLEVWQKSLESLRHYTASLNEYYYQNV 314


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -3

Query: 254 LQSEDYAELLHNMLAKMVKYGESLEHYYYAKINLLDHCKIYGKEAVD 114
           ++   YA+ L  +   M  +   L  YY   INL+++ +   +E++D
Sbjct: 706 MEKPTYAQYLEQLWGDMSDFSTHLSFYYLCSINLMENVE---EESID 749


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 307 LDKLFTSTEWKQKLIESFSKARTMLSYCIICWQKWLNTVSR*NTTI 170
           L  L T T W+   + + S+ R + S  ++  QK++ +  +  TTI
Sbjct: 142 LQDLTTGTPWETITLTTLSRDRGIFSELLLEAQKFMQSAQKNKTTI 187


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 266 YRIFLQSE-DYAELLHNMLAKMVKYGESLEHYYYAKI 159
           Y+ +L+ + DY+ELL N   ++ K  ES +  Y A I
Sbjct: 176 YKSYLEKQSDYSELLDNYKKQLNKASESCKGNYQACI 212


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 251 QSEDYAELLHNMLAKMVKYGESLEHYYYAKINLLDHCKIYGK 126
           ++ D A ++H+   K    GE ++   + K   +D CK  GK
Sbjct: 344 KAPDAAGIIHSDFKKKFVAGEVIKFSDFEKYKSVDACKSVGK 385


>SPAPB2B4.07 |||ubiquitin family protein, human UBTD1
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 273 CFHSVEVNNLSNNAIDP---NNRASLPRLSCGDPILDPEEEDARR 398
           C    +V  ++NN  +    +N   LP+L   +P+L  EE + RR
Sbjct: 4   CLSGNQVAGVANNGGEQPSGSNILRLPKLYTPNPLLTKEEVEVRR 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,684
Number of Sequences: 5004
Number of extensions: 34020
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)