Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1122
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0359 + 3152483-3152857,3154493-3154855,3155133-3155211,315... 30 0.77
07_01_0018 + 121378-122130 28 4.1
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626... 28 4.1
08_02_0446 - 17221514-17221626,17221960-17222035,17222381-172225... 27 5.4
01_06_0917 + 32978306-32978434,32978570-32978645,32979324-329793... 27 5.4
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 27 5.4
02_04_0458 - 23102262-23102377,23102505-23102661,23103094-231041... 27 7.2
02_04_0456 - 23089507-23090607,23091561-23091635 27 7.2
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380... 27 9.5
>08_01_0359 +
3152483-3152857,3154493-3154855,3155133-3155211,
3155473-3155879,3156342-3156497,3156728-3156895,
3156991-3157131,3157739-3157966,3158063-3158176,
3158293-3158448
Length = 728
Score = 30.3 bits (65), Expect = 0.77
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = +3
Query: 315 IDPNNRAS--LPRLSCGDPILDPEEEDARRLL 404
I+PN+R+S L SCG+ +LD + ED+ LL
Sbjct: 306 IEPNDRSSAMLSSTSCGEGLLDIQMEDSSHLL 337
>07_01_0018 + 121378-122130
Length = 250
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 417 QGQDRGDGVRLPLQDLIWGHRSLSVVRRHDCSDQLH 310
+ D GDG L LI H +S+V D+LH
Sbjct: 124 RANDDGDGGTFALYSLISRHAKVSLVPNQQAEDELH 159
>03_05_0105 -
20861130-20861384,20861472-20862262,20862364-20862618,
20862713-20862827,20862959-20863011,20863113-20863373,
20863699-20863749,20863863-20864114,20864504-20864726,
20865317-20865460
Length = 799
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 408 DRGDGVRLPLQDLIWGHRSLSVVRRHDCSDQL 313
D GDG L LI H +S++ H D+L
Sbjct: 119 DHGDGGTFALYSLISRHAKVSLIPNHQAEDEL 150
>08_02_0446 -
17221514-17221626,17221960-17222035,17222381-17222536,
17222645-17222723,17223858-17224087,17224938-17225076,
17225158-17225220,17226198-17226279,17226366-17226444,
17227046-17227225,17227331-17227590,17227704-17227806,
17227915-17228058,17228148-17228246
Length = 600
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 243 LALEKDSISFCFHSVEVNNLSNNAIDPNNRASLPRLSCGDPILDPEEEDARRL 401
+ L+ D ++C H + V N ID + R+ G P+L+ EEE R+
Sbjct: 298 VGLKLDRCTYC-HEIGVTGTYNIIIDSPLTLNPTRMLRGAPVLEFEEESYSRI 349
>01_06_0917 +
32978306-32978434,32978570-32978645,32979324-32979391,
32979868-32979959,32980121-32980194,32980372-32980415,
32980752-32980803,32981200-32981319,32981391-32981503,
32981674-32981761,32982144-32982229,32982832-32982918,
32983149-32983252,32983607-32983709,32983861-32983956,
32984067-32984256,32984352-32984413,32984560-32984664,
32985163-32985364,32985473-32985681,32986413-32986537,
32986644-32986695,32986772-32986858,32987125-32987247,
32987375-32987629
Length = 913
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 191 ESLEHYYYAKINLLDHCKIYGKEAVDCL 108
E L+ Y NL+ H +YGKE++DC+
Sbjct: 198 ELLKFYENYSANLM-HLVVYGKESLDCI 224
>01_06_0916 +
32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 191 ESLEHYYYAKINLLDHCKIYGKEAVDCL 108
E L+ Y NL+ H +YGKE++DC+
Sbjct: 706 ELLKFYENYSANLM-HLVVYGKESLDCI 732
>02_04_0458 -
23102262-23102377,23102505-23102661,23103094-23104140,
23104357-23104500,23105389-23105457
Length = 510
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -3
Query: 260 IFLQSEDYAELLHNMLAKMVKYGESLEHYYYAKINLLDHCKIYG 129
I+L + L + K K + L HYY +++ + CK++G
Sbjct: 109 IYLHGQKVTYFLRPIWEKPPKPFKVLPHYYNENVSMANLCKLHG 152
>02_04_0456 - 23089507-23090607,23091561-23091635
Length = 391
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -3
Query: 260 IFLQSEDYAELLHNMLAKMVKYGESLEHYYYAKINLLDHCKIYG 129
I++ + L + K K L HYY+ +++ + CK++G
Sbjct: 63 IYVHGQKVTYFLRPIWEKPPKPFNVLPHYYHENVSMANLCKLHG 106
>01_01_0517 +
3803740-3806106,3806226-3806312,3806397-3807035,
3807118-3807282,3807363-3807657,3807739-3807953,
3808125-3808430,3808539-3808602,3808735-3808974,
3809150-3809253
Length = 1493
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 3 FFCLRTLPTFTVLKYLSTSSGCSTDFNGTIFS 98
F CL LPT VLK S SS + + FS
Sbjct: 601 FLCLEELPTDAVLKLPSGSSDVAIEVRNGCFS 632
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,354,405
Number of Sequences: 37544
Number of extensions: 210277
Number of successful extensions: 547
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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