Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1122
(457 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_36218| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_30341| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31) 27 7.4
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) 27 7.4
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11) 27 9.7
SB_40272| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=2.4) 27 9.7
>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2516
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 200 KYGESLEHYYYAKINLLDHCKIYGKEAVDCL-LYGAKDRAVKI 75
KYGES YY K+N + ++ K+ + ++G K++A I
Sbjct: 1738 KYGESCYLMYYNKLNWKEAGEVCQKDGAQLISIHGVKEQAYMI 1780
>SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1004
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 281 VETKTYRIFLQSEDYAELLHNMLAKMVKYGESL-EHYYYAKINLLDHCKIYGKEA 120
+ + + ++L+ + E N L V +G+ L H+ + L+D C +YG E+
Sbjct: 102 IHHRVFMVYLRMSTHKESQSNFLTPEV-FGDILYNHFLFDIPKLMDLCALYGGES 155
>SB_36218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 369
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 6 FCLRTLPTFTVLKYLSTSSGCSTDFNGT 89
FC R +V K+L T GC+T+ N T
Sbjct: 155 FCARLRGQASVCKFLITCPGCNTEVNYT 182
>SB_30341| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 18 TLP-TFTVLKYLSTSSGCSTDFNGTIFSPIQ*TVYRF 125
TLP T ++K+ +G ST + I +P+Q T+Y +
Sbjct: 72 TLPITVDIVKHRGELAGKSTATHAAILAPVQVTIYNY 108
>SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31)
Length = 541
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 55 LAQVAAPILTARSLAPYSKQSTASLP 132
L +A P+L A ++APYS A LP
Sbjct: 4 LRSLAIPVLLALAIAPYSTYGQALLP 29
>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
Length = 1420
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = +2
Query: 110 NSLPLPCHKFCNDLTSLFLHNSSVLATHRI*PFL---PTYYAVTQHSPRFGERFYKFLFP 280
N L + C C+ SLF+ +SV+ P++ YY +H + + +FP
Sbjct: 110 NMLDMYCESTCSPDQSLFMDPTSVVGFPPYTPYMINAINYYIAPEHKDQLFKSCKDVIFP 169
Query: 281 LSRGK*FI**CN*SEQSC 334
+ K C S ++C
Sbjct: 170 GNNEKILNLLCGQSAETC 187
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = +2
Query: 110 NSLPLPCHKFCNDLTSLFLHNSSVLATHRI*PFL---PTYYAVTQHSPRFGERFYKFLFP 280
N L + C C+ SLF+ +SV+ P++ YY +H + + +FP
Sbjct: 330 NMLDMYCESTCSPDQSLFMDPTSVVGFPPYTPYMINAINYYIAPEHKDQLFKSCKDVIFP 389
Query: 281 LSRGK*FI**CN*SEQSC 334
+ K C S ++C
Sbjct: 390 GNNEKILNLLCGQSAETC 407
>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3511
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 222 MQ*LSIVLALEKDSISFCFHSVEVNNLSNNAIDP 323
+Q + +V +L D +SF S VNNL + ++P
Sbjct: 3123 LQRMLVVRSLRPDRVSFTATSFIVNNLGSKFVEP 3156
>SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)
Length = 1552
Score = 26.6 bits (56), Expect = 9.7
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = +3
Query: 189 LTVFNHFCQHIMQ*LSIVLALEKDSISFCFHSVEVNNLSNNAIDPNNRASLPRLSCGDPI 368
L+V F I + + +L S C HS LSN + P +RAS+ R C
Sbjct: 239 LSVLEDFSHEIREGVRELLGHCHLSTRACLHSAIHALLSNLSKYPQDRASIWR--CAQQ- 295
Query: 369 LDPEEEDARRLLCPVLVDFHPF 434
L + + L P L+ HP+
Sbjct: 296 LGKKHQHLASSLVPELLSTHPY 317
>SB_40272| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=2.4)
Length = 843
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 3 FFCLRTLPTFTVLKYLSTSSGCSTDFNGTIFSPI 104
F C+RT PT V K +++ S D T ++P+
Sbjct: 91 FTCIRTQPTRQVSKEVTSYITLSCDVYNTTYTPV 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,144,191
Number of Sequences: 59808
Number of extensions: 254582
Number of successful extensions: 759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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