Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1122
(457 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ871144-1|CAI38753.2| 476|Caenorhabditis elegans UDP-galactopy... 30 0.69
AF125442-8|AAD12787.2| 476|Caenorhabditis elegans Hypothetical ... 30 0.69
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr... 30 0.92
L16621-11|AAA28226.2| 192|Caenorhabditis elegans Hypothetical p... 29 2.1
AF003142-3|AAB54188.1| 739|Caenorhabditis elegans Him-three par... 29 2.1
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 27 6.5
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 27 6.5
CU457741-13|CAM36354.1| 608|Caenorhabditis elegans Hypothetical... 27 6.5
CU457741-11|CAM36352.1| 609|Caenorhabditis elegans Hypothetical... 27 6.5
AF068201-1|AAC70927.1| 609|Caenorhabditis elegans aminopeptidas... 27 6.5
AF068200-1|AAC72891.1| 609|Caenorhabditis elegans aminopeptidas... 27 6.5
>AJ871144-1|CAI38753.2| 476|Caenorhabditis elegans
UDP-galactopyranose mutase protein.
Length = 476
Score = 30.3 bits (65), Expect = 0.69
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 149 DHCKIYGKEAVDCLLYGAKDRAVKIGAAT 63
DHC I GKE +D ++ G ++ K G T
Sbjct: 444 DHCFIQGKEFIDRVILGEPEKLYKTGVPT 472
>AF125442-8|AAD12787.2| 476|Caenorhabditis elegans Hypothetical
protein H04M03.4 protein.
Length = 476
Score = 30.3 bits (65), Expect = 0.69
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 149 DHCKIYGKEAVDCLLYGAKDRAVKIGAAT 63
DHC I GKE +D ++ G ++ K G T
Sbjct: 444 DHCFIQGKEFIDRVILGEPEKLYKTGVPT 472
>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical
protein ZK430.1 protein.
Length = 1650
Score = 29.9 bits (64), Expect = 0.92
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 243 LALEKDSISFCFHSVEVNNLSNNAIDPNNRASLPRLSCGDPILDPE 380
L +EK +S F E N LSN A L ++ DP+ D E
Sbjct: 20 LTVEKRHVSLLFDRKEANKLSNETAHRIGVAGLEQMKRIDPVFDTE 65
>L16621-11|AAA28226.2| 192|Caenorhabditis elegans Hypothetical
protein ZK688.1 protein.
Length = 192
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 294 NNLSNNAIDPNNRASLPRLSCGDPILDPEEEDARRLLCPVLV 419
NN+ PNN P +S P DPE+ + L CP L+
Sbjct: 71 NNVLPEPSKPNNPVVNPPVSPIQPKTDPEQSENDCLSCPSLI 112
>AF003142-3|AAB54188.1| 739|Caenorhabditis elegans Him-three
paralog protein 3 protein.
Length = 739
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 360 DPILDPEEEDARRLLCPVLVDFHP 431
+PI++P+ ARRL+ PV VD P
Sbjct: 401 EPIVNPKRRSARRLVPPVEVDEQP 424
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 264 ISFCFHSVEVNNLSNNA--IDPNNRASLPRLSCGDPILDP 377
I+FC S EVN + NA + P NR + R + G P ++P
Sbjct: 50 INFCKGSAEVNYMKANAGPVPPRNRTT--RQAYGGPEVNP 87
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 264 ISFCFHSVEVNNLSNNA--IDPNNRASLPRLSCGDPILDP 377
I+FC S EVN + NA + P NR + R + G P ++P
Sbjct: 50 INFCKGSAEVNYMKANAGPVPPRNRTT--RQAYGGPEVNP 87
>CU457741-13|CAM36354.1| 608|Caenorhabditis elegans Hypothetical
protein C42C1.11c protein.
Length = 608
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 301 KLFTSTEWKQKLIESFSKARTMLSYCIICWQKWLN 197
K ++ EWK+ L +SF+ + +L I W WL+
Sbjct: 420 KTVSTEEWKEYLYDSFTDKKVILDN--IDWNLWLH 452
>CU457741-11|CAM36352.1| 609|Caenorhabditis elegans Hypothetical
protein C42C1.11a protein.
Length = 609
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 301 KLFTSTEWKQKLIESFSKARTMLSYCIICWQKWLN 197
K ++ EWK+ L +SF+ + +L I W WL+
Sbjct: 421 KTVSTEEWKEYLYDSFTDKKVILDN--IDWNLWLH 453
>AF068201-1|AAC70927.1| 609|Caenorhabditis elegans aminopeptidase-1
protein.
Length = 609
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 301 KLFTSTEWKQKLIESFSKARTMLSYCIICWQKWLN 197
K ++ EWK+ L +SF+ + +L I W WL+
Sbjct: 421 KTVSTEEWKEYLYDSFTDKKVILDN--IDWNLWLH 453
>AF068200-1|AAC72891.1| 609|Caenorhabditis elegans aminopeptidase-1
protein.
Length = 609
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 301 KLFTSTEWKQKLIESFSKARTMLSYCIICWQKWLN 197
K ++ EWK+ L +SF+ + +L I W WL+
Sbjct: 421 KTVSTEEWKEYLYDSFTDKKVILDN--IDWNLWLH 453
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,809,428
Number of Sequences: 27780
Number of extensions: 185371
Number of successful extensions: 468
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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