Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1122
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 301 KLFTSTEWKQKLIESFS---KARTMLSYCIICWQKWLNTV 191
           KLF   +WK  ++ES +   + RTM  Y  + W  W+ ++
Sbjct: 444 KLFE--QWKS-ILESGTTTLQTRTMHPYDHLVWNSWMPSI 480


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 67  AAPILTARSLAPYSKQSTASLP 132
           A P+L  +  AP S+ S  S+P
Sbjct: 111 ANPLLAEKLAAPSSQASPTSIP 132


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 197 YGESLEHYYYAKINLLDHCKIYGKEAVDCLLYGAKDRAVK 78
           YG  ++ Y    +N+L +      ++V+  LYG  D  V+
Sbjct: 346 YGNHVKLYTKQGLNVLGNIVQGNGDSVNVQLYGQLDLLVR 385


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 119 PLPCHKFCNDLT 154
           PLP H  C DL+
Sbjct: 443 PLPLHTECEDLS 454


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 119 PLPCHKFCNDLT 154
           PLP H  C DL+
Sbjct: 443 PLPLHTECEDLS 454


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 197 YGESLEHYYYAKINLLDHCKIYGKEAVDCLLYGAKDRAVK 78
           YG  ++ Y    +N+L +      ++V+  LYG  D  V+
Sbjct: 346 YGNHVKLYTKQGLNVLGNIVQGNGDSVNVQLYGQLDLLVR 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,077
Number of Sequences: 438
Number of extensions: 2394
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)