Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1122
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g07943.1 68417.m01271 hypothetical protein similar to At4g052...    28   3.4  
At4g23540.1 68417.m03392 expressed protein probable membrane pro...    27   4.5  
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil...    27   4.5  
At1g69210.1 68414.m07923 expressed protein                             27   4.5  
At4g36630.2 68417.m05198 expressed protein                             27   6.0  
At4g36630.1 68417.m05199 expressed protein                             27   6.0  

>At4g07943.1 68417.m01271 hypothetical protein similar to At4g05290,
           At3g42740, At5g35010, At5g36840, At3g43390, At2g14770,
           At2g05560, At4g08880, At1g34730
          Length = 213

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 254 LQSEDYAELLHNMLAKMVKYGESLEHYYYAK 162
           L+SED  ++   +L ++ KYG +L+ Y YAK
Sbjct: 138 LESEDTRDICEEVLEEIKKYGNTLK-YTYAK 167


>At4g23540.1 68417.m03392 expressed protein probable membrane
           protein YPL012w, Saccharomyces cerevisiae, PIR2:S59681
          Length = 675

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -3

Query: 251 QSEDYAELLHNMLAKMVKYGESLEHYYYAKINLL 150
           Q++D   LL N+L +++ +     HY+ +K+ ++
Sbjct: 505 QAQDLHSLLQNLLYEILPWSSVSRHYFKSKVTII 538


>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profile: PF00076 RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain); similar to
           ras-GTPase-activating protein (GAP<120>)
           SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
          Length = 488

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 206 FLPTYYAVTQHSPRFGERFYKFLFPLSR 289
           F+P YY +   SP    RFY+ +  L R
Sbjct: 23  FVPQYYHILHQSPEHVHRFYQEISKLGR 50


>At1g69210.1 68414.m07923 expressed protein
          Length = 305

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -2

Query: 435 EKDENRQGQ--DRGDGVRLPLQDLIWGHRSLSV 343
           ++DE+ + Q  D GDG  + L+ + WG R LS+
Sbjct: 103 DEDEDVESQLGDGGDGGGIVLKGVAWGERVLSI 135


>At4g36630.2 68417.m05198 expressed protein
          Length = 950

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = -3

Query: 287 D*VETKTYRIFLQSEDYAEL-----LHNMLAKMVKY 195
           D +E+ + R FL+SED A+L      HN L  ++KY
Sbjct: 407 DDMESSSPRYFLESEDNADLESKKMSHNTLMALIKY 442


>At4g36630.1 68417.m05199 expressed protein
          Length = 519

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = -3

Query: 287 D*VETKTYRIFLQSEDYAEL-----LHNMLAKMVKY 195
           D +E+ + R FL+SED A+L      HN L  ++KY
Sbjct: 407 DDMESSSPRYFLESEDNADLESKKMSHNTLMALIKY 442


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,263,186
Number of Sequences: 28952
Number of extensions: 175798
Number of successful extensions: 413
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)