Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1120
(556 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137; Eukar... 130 2e-29
UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58; Eukary... 120 2e-26
UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal ... 89 8e-17
UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e cont... 87 3e-16
UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza ... 75 8e-13
UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p... 73 3e-12
UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, wh... 72 1e-11
UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia... 71 2e-11
UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1; Encepha... 69 1e-10
UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory ... 60 3e-08
UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative; ... 60 3e-08
UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4; Euryar... 60 3e-08
UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9; Euryar... 59 6e-08
UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11; Archa... 58 1e-07
UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4; Thermo... 58 1e-07
UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10; Archa... 54 2e-06
UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4; Methan... 53 5e-06
UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 50 3e-05
UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n... 49 6e-05
UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14; Bacter... 49 6e-05
UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5; Haloba... 49 8e-05
UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole geno... 48 1e-04
UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 48 1e-04
UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiell... 47 3e-04
UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1; uncul... 46 6e-04
UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1; Nanoar... 45 0.001
UniRef50_A6SEJ9 Cluster: Putative uncharacterized protein; n=2; ... 37 0.36
UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia... 36 0.48
UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4; Endopterygota|... 36 0.84
UniRef50_Q6UVP6 Cluster: Ribosomal protein S13; n=1; Pseudendocl... 35 1.5
UniRef50_A5FGA8 Cluster: DNA-(Apurinic or apyrimidinic site) lya... 33 3.4
UniRef50_Q849N3 Cluster: Putative uncharacterized protein pSV2.0... 33 4.5
UniRef50_UPI00004999F3 Cluster: hypothetical protein 23.t00039; ... 33 5.9
UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium lot... 32 7.8
UniRef50_Q18YK0 Cluster: DNA glycosylase; n=2; Desulfitobacteriu... 32 7.8
>UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137;
Eukaryota|Rep: 40S ribosomal protein S18 - Drosophila
melanogaster (Fruit fly)
Length = 152
Score = 130 bits (315), Expect = 2e-29
Identities = 61/69 (88%), Positives = 66/69 (95%)
Frame = +1
Query: 49 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 228
MSLVIP+KFQHILRIMNTNIDGKRKV AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 229 EEEVEKIIT 255
EEEV+K++T
Sbjct: 61 EEEVDKVVT 69
Score = 123 bits (297), Expect = 2e-27
Identities = 53/62 (85%), Positives = 60/62 (96%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
I+SNP QYK+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+HRG+RHYWGL
Sbjct: 70 IISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGL 129
Query: 435 RV 440
RV
Sbjct: 130 RV 131
>UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58;
Eukaryota|Rep: 40S ribosomal protein S18 - Homo sapiens
(Human)
Length = 152
Score = 120 bits (289), Expect = 2e-26
Identities = 51/62 (82%), Positives = 58/62 (93%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
IM NPRQYKIPDWFLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAHRG+RH+WGL
Sbjct: 70 IMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGL 129
Query: 435 RV 440
RV
Sbjct: 130 RV 131
Score = 120 bits (288), Expect = 3e-26
Identities = 53/69 (76%), Positives = 66/69 (95%)
Frame = +1
Query: 49 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 228
MSLVIP+KFQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 229 EEEVEKIIT 255
E+EVE++IT
Sbjct: 61 EDEVERVIT 69
>UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal
protein S18; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S18 - Rattus norvegicus
Length = 170
Score = 88.6 bits (210), Expect = 8e-17
Identities = 40/69 (57%), Positives = 57/69 (82%)
Frame = +1
Query: 49 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 228
MSLVI +K QHIL+++NTNID +++ FA+TA KG +RY+++VL+KA IDL K AGE T
Sbjct: 1 MSLVISEKSQHILQVLNTNIDEQQETAFAITATKGAEQRYAHVVLRKAGIDLTKMAGELT 60
Query: 229 EEEVEKIIT 255
E++VE++IT
Sbjct: 61 EDKVERVIT 69
Score = 83.4 bits (197), Expect = 3e-15
Identities = 39/62 (62%), Positives = 49/62 (79%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
IM NPRQY+IP QK + DG+ SQ+ ++ LD+KLRE+LERLKKIRAHRG+RH+WGL
Sbjct: 70 IMQNPRQYEIP------QKGVRDGRCSQVPANGLDNKLREELERLKKIRAHRGLRHFWGL 123
Query: 435 RV 440
V
Sbjct: 124 HV 125
>UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: ribosomal protein S13p/S18e containing
protein - Tetrahymena thermophila SB210
Length = 155
Score = 87.0 bits (206), Expect = 3e-16
Identities = 35/62 (56%), Positives = 49/62 (79%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
++++P + IP W LNR D DGK Q+ S+ LD+K+REDLERLKKI++HRG+RH+WGL
Sbjct: 72 LIADPEAHGIPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIKSHRGLRHFWGL 131
Query: 435 RV 440
+V
Sbjct: 132 KV 133
Score = 65.7 bits (153), Expect = 7e-10
Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Frame = +1
Query: 49 MSLVIPDK--FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGE 222
MS VI + F++I RI+NTNIDGKR A+T I+G+GRR++ I+ K ID + RAG
Sbjct: 1 MSFVIEKESDFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGL 60
Query: 223 CTEEEVEKI 249
TE++ KI
Sbjct: 61 LTEDQCNKI 69
>UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza
sativa (japonica cultivar-group)|Rep: Ribosomal protein
S18-like - Oryza sativa subsp. japonica (Rice)
Length = 145
Score = 75.4 bits (177), Expect = 8e-13
Identities = 32/46 (69%), Positives = 40/46 (86%)
Frame = +3
Query: 303 RQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 440
++KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 79 QKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 124
>UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p -
Drosophila melanogaster (Fruit fly)
Length = 246
Score = 73.3 bits (172), Expect = 3e-12
Identities = 32/37 (86%), Positives = 36/37 (97%)
Frame = +1
Query: 145 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIIT 255
IKGVGRRYSNIVLKKAD+DL KRAGECTEEEV+K++T
Sbjct: 1 IKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVT 37
>UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_89,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 193
Score = 71.7 bits (168), Expect = 1e-11
Identities = 33/69 (47%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
Frame = +1
Query: 49 MSLVIP--DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGE 222
MSLV+ D+F+ I+RI+NTN+DGK+++ + + +IKG+GRR++ + K ++L KRAGE
Sbjct: 1 MSLVLEKADQFRQIIRILNTNVDGKQQMAYEIRSIKGIGRRFAIQICKVLRLNLTKRAGE 60
Query: 223 CTEEEVEKI 249
T+EE KI
Sbjct: 61 LTDEEAHKI 69
Score = 50.8 bits (116), Expect = 2e-05
Identities = 22/45 (48%), Positives = 36/45 (80%), Gaps = 2/45 (4%)
Frame = +3
Query: 309 KDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRG--MRHYWGLR 437
+D+ +GK ++T++ L++KLREDLER+KKI+ + +RH+WGLR
Sbjct: 81 RDLKNGKNYEVTTNELETKLREDLERIKKIKYSQWLCLRHHWGLR 125
>UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_8004_7540 - Giardia lamblia ATCC
50803
Length = 154
Score = 70.9 bits (166), Expect = 2e-11
Identities = 31/67 (46%), Positives = 49/67 (73%)
Frame = +1
Query: 52 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 231
++V P+ ++ +LR+ NTNI GK + A+ IKG+GRR++N+ LKKA+ID+ KRAGE T
Sbjct: 3 TIVQPNDYRDLLRMFNTNIQGKVVLECALVGIKGIGRRFANVALKKANIDVHKRAGELTA 62
Query: 232 EEVEKII 252
E + ++
Sbjct: 63 AEEDALM 69
Score = 56.8 bits (131), Expect = 3e-07
Identities = 25/62 (40%), Positives = 36/62 (58%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
++ +P + IP W LNR D GK + + + S R DLERL+K R RG+RH+ L
Sbjct: 71 VLEDPLSHGIPAWMLNRNNDFESGKDMHILVNTIASTHRADLERLRKTRCERGVRHHHNL 130
Query: 435 RV 440
+V
Sbjct: 131 KV 132
>UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S18
- Encephalitozoon cuniculi
Length = 153
Score = 68.5 bits (160), Expect = 1e-10
Identities = 30/62 (48%), Positives = 46/62 (74%)
Frame = +1
Query: 64 PDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 243
P + Q+I+RI NTNIDG +++ FA+T I+G+G R + + K+ IDL KRAGE E+E++
Sbjct: 7 PAEVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMK 66
Query: 244 KI 249
+I
Sbjct: 67 RI 68
Score = 46.4 bits (105), Expect = 4e-04
Identities = 24/59 (40%), Positives = 35/59 (59%)
Frame = +3
Query: 264 NPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 440
+P IP+ ++N Q+DI+DG S L + LD+ LR +ER KK + R R GL+V
Sbjct: 74 DPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRLDVGLKV 132
>UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory
specific medium-chain acyl CoA synthetase; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
olfactory specific medium-chain acyl CoA synthetase -
Ornithorhynchus anatinus
Length = 176
Score = 60.5 bits (140), Expect = 3e-08
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +3
Query: 258 MSNPRQYKIPDWFLNRQKDIVDGKYSQL 341
M NPRQYKIPDWFLNRQKD+ DGKYSQ+
Sbjct: 1 MQNPRQYKIPDWFLNRQKDVKDGKYSQV 28
>UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative;
n=3; Trichomonas vaginalis G3|Rep: Ribosomal protein
S13p/S18e, putative - Trichomonas vaginalis G3
Length = 155
Score = 60.5 bits (140), Expect = 3e-08
Identities = 25/62 (40%), Positives = 43/62 (69%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
I+ NP +++IP W LNR+ D G+ + +++L + +R ++ER+KK+R RG+RH GL
Sbjct: 72 IIQNPTEHQIPVWMLNRRFDRATGQNTHWVATDLSANIRAEIERMKKMRMKRGIRHGLGL 131
Query: 435 RV 440
+V
Sbjct: 132 KV 133
Score = 60.1 bits (139), Expect = 3e-08
Identities = 25/64 (39%), Positives = 46/64 (71%)
Frame = +1
Query: 64 PDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 243
P F+ ++R+++TN+DG+R + A+T I G+GRR++ V+++A +D +RAG T +E E
Sbjct: 8 PAAFRDMVRMLSTNVDGRRPLYLALTNISGIGRRFAYAVVRRAGLDPLRRAGTLTPKEEE 67
Query: 244 KIIT 255
I++
Sbjct: 68 LIVS 71
>UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanosarcina acetivorans
Length = 162
Score = 60.5 bits (140), Expect = 3e-08
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = +3
Query: 282 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 440
+P W LNRQKD+ G+ L +++ RED+ LKK+RA+RG+RH GL+V
Sbjct: 89 VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKV 141
Score = 58.0 bits (134), Expect = 1e-07
Identities = 25/64 (39%), Positives = 42/64 (65%)
Frame = +1
Query: 67 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 246
++ +H++RIMNT++ G + V +A+T + GVGRR + ++ K A +D G EEEV K
Sbjct: 18 EELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAK 77
Query: 247 IITS 258
+ T+
Sbjct: 78 LDTA 81
>UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanococcus jannaschii
Length = 150
Score = 59.3 bits (137), Expect = 6e-08
Identities = 25/60 (41%), Positives = 40/60 (66%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
++++P ++ IP W NR+KD V G+ + S+L +ED+ RLK+IR +RG+RH GL
Sbjct: 67 VLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHELGL 126
Score = 54.8 bits (126), Expect = 1e-06
Identities = 23/60 (38%), Positives = 42/60 (70%)
Frame = +1
Query: 70 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 249
+F++++R+ T++DG +K++ A+ I GVG + +++ A +D +K AG TEEEV+KI
Sbjct: 5 EFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKI 64
>UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11;
Archaea|Rep: 30S ribosomal protein S13P - Uncultured
methanogenic archaeon RC-I
Length = 224
Score = 58.4 bits (135), Expect = 1e-07
Identities = 25/61 (40%), Positives = 41/61 (67%)
Frame = +1
Query: 67 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 246
D+ ++I+RI NT++DG + V FA+T IKG+G R S I+ ++A +D G E+V+K
Sbjct: 67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDK 126
Query: 247 I 249
+
Sbjct: 127 L 127
Score = 50.0 bits (114), Expect = 4e-05
Identities = 21/53 (39%), Positives = 35/53 (66%)
Frame = +3
Query: 282 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 440
+P W LNR++DI G+ L +L ++ED+ +KKIR+++G+RH G +V
Sbjct: 138 VPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHERGQKV 190
>UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S13P -
Thermoplasma acidophilum
Length = 171
Score = 58.4 bits (135), Expect = 1e-07
Identities = 22/59 (37%), Positives = 43/59 (72%)
Frame = +1
Query: 73 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 249
FQ+I+RI N +++G+R + A++ +KG+G R ++ ++ D+ +DK+ GE EE++EK+
Sbjct: 28 FQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKL 86
Score = 57.6 bits (133), Expect = 2e-07
Identities = 22/57 (38%), Positives = 42/57 (73%)
Frame = +3
Query: 270 RQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 440
++Y +P+W LN +++ V GK L S++L+ +++ED+ +KKIR+++G+RH G +V
Sbjct: 93 KEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKGKKV 149
>UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10;
Archaea|Rep: 30S ribosomal protein S13P - Sulfolobus
tokodaii
Length = 172
Score = 54.0 bits (124), Expect = 2e-06
Identities = 20/60 (33%), Positives = 41/60 (68%)
Frame = +1
Query: 70 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 249
+F++I+R+ ++DG KV +A+ +KG+G + ++ K +D D+R GE ++E+++KI
Sbjct: 6 QFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKI 65
Score = 53.6 bits (123), Expect = 3e-06
Identities = 26/66 (39%), Positives = 43/66 (65%)
Frame = +3
Query: 243 KNYHIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 422
+NY +++ + ++P+W NR+KD G L +S+L +R D+ER KKI++ RG+RH
Sbjct: 66 ENY--LTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRH 123
Query: 423 YWGLRV 440
GL+V
Sbjct: 124 SLGLKV 129
>UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4;
Methanococcus|Rep: 30S ribosomal protein S13P -
Methanococcus maripaludis
Length = 149
Score = 52.8 bits (121), Expect = 5e-06
Identities = 20/56 (35%), Positives = 35/56 (62%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 422
++ +P + IP W NR+KD+ G L ++L ++ED+ +KKIR ++G+RH
Sbjct: 67 VLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRH 122
Score = 49.2 bits (112), Expect = 6e-05
Identities = 20/60 (33%), Positives = 40/60 (66%)
Frame = +1
Query: 70 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 249
+F+H +RI T+++GK + +A+ +KG+GR + V++ ++D ++AG +E+V KI
Sbjct: 5 EFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKI 64
>UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S13P -
Cenarchaeum symbiosum
Length = 227
Score = 50.4 bits (115), Expect = 3e-05
Identities = 21/62 (33%), Positives = 39/62 (62%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
++ +P P WFLNR+KD+ G+ + +S+++ +R D+ER + + +G RH +GL
Sbjct: 112 LLQDPAGAGFPTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRHMFGL 171
Query: 435 RV 440
+V
Sbjct: 172 KV 173
Score = 43.6 bits (98), Expect = 0.003
Identities = 17/60 (28%), Positives = 36/60 (60%)
Frame = +1
Query: 70 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 249
+++HI+RI+ ++ G++K + + I+G+G ++ +L ID + G T+E+V I
Sbjct: 50 EYKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASI 109
>UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 14 contig 1, DNA
sequence - Ostreococcus tauri
Length = 272
Score = 49.2 bits (112), Expect = 6e-05
Identities = 26/66 (39%), Positives = 39/66 (59%)
Frame = -3
Query: 452 VLTTHTKAPVMSHPSVSANLLEPLQIFTEF*IQVGGGQLAVFTINNILLPI*EPVWYLIL 273
VLTT T APV+S SV +NLL+ L++ + +++ G L I I+L + EP+ L
Sbjct: 44 VLTTDTDAPVVSQTSVVSNLLQTLEVVAQLRVELVGHHLRELAILEIVLAVQEPIRNSEL 103
Query: 272 PRIRHD 255
R+ HD
Sbjct: 104 SRVGHD 109
>UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14;
Bacteria|Rep: 30S ribosomal protein S13 - Thermotoga
maritima
Length = 125
Score = 49.2 bits (112), Expect = 6e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +1
Query: 88 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 249
RI+ + +KV A+T I G+GR S +LK ID +KR G+ T+EE+ KI
Sbjct: 3 RIVGVELPNNKKVWVALTYIYGIGRSRSFEILKNTGIDPEKRVGDLTDEEISKI 56
>UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 177
Score = 48.8 bits (111), Expect = 8e-05
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +3
Query: 282 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 440
+P+W N QKD G+ + T ++L R+D+ R+K I ++RG+RH G +V
Sbjct: 89 VPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQKV 141
Score = 46.8 bits (106), Expect = 3e-04
Identities = 18/62 (29%), Positives = 39/62 (62%)
Frame = +1
Query: 67 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 246
+ ++ +RI T++DG + V A+T + G+G R + I+ +KAD+D G+ ++ +E+
Sbjct: 18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIER 77
Query: 247 II 252
++
Sbjct: 78 VV 79
>UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_31, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 48
Score = 48.4 bits (110), Expect = 1e-04
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +3
Query: 39 LNQNVAGHSRQISTYSSYHEYEHRWQTKGYVCDDGYQRCWP 161
L+ +V G R IST++S ++E RW+T+ +VC D +QR WP
Sbjct: 5 LSMSVLGSERGISTHTSCAQHERRWETEDHVCSDLHQRYWP 45
>UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2;
Thermoproteaceae|Rep: 30S ribosomal protein S13P -
Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)
Length = 152
Score = 48.0 bits (109), Expect = 1e-04
Identities = 21/52 (40%), Positives = 33/52 (63%)
Frame = +3
Query: 285 PDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 440
P WFLNR+KD G+ L S L + D++ +KK+++ +G+RH GL+V
Sbjct: 75 PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKV 126
Score = 37.9 bits (84), Expect = 0.16
Identities = 18/66 (27%), Positives = 37/66 (56%)
Frame = +1
Query: 82 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITSC 261
I+R+ +T+++G ++V +A+ I+G+G + + K ID G EE++ K+ +
Sbjct: 8 IVRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINKLDWAV 67
Query: 262 RILGSI 279
R L +
Sbjct: 68 RNLHEV 73
>UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiella
natans|Rep: Ribosomal protein S18 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 159
Score = 47.2 bits (107), Expect = 3e-04
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +3
Query: 252 HIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 422
+I + P W +NR+ D + G + S+ LDS L+ED++RL I+ ++G+RH
Sbjct: 75 NIFGKSSRKAFPSWLMNRRADFLTGDNLHVLSTVLDSALQEDIKRLVTIKNNKGLRH 131
Score = 37.9 bits (84), Expect = 0.16
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +1
Query: 67 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 246
+K +RI + NI+G F + IKGVG R SN++ K D++ + + ++E+
Sbjct: 13 EKSMTFIRIFDCNINGSLSCNFGLRNIKGVGIRMSNVLRKILKKDINYKLYNIEKADLEE 72
Query: 247 II 252
++
Sbjct: 73 VV 74
>UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1;
uncultured euryarchaeote ARMAN-2|Rep: SSU ribosomal
protein S13AB - uncultured euryarchaeote ARMAN-2
Length = 177
Score = 46.0 bits (104), Expect = 6e-04
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
++ +P +Y +P + LNR+ D+ GK L ++L +R+ + R +R RG RH +G
Sbjct: 81 LIKDPHKYGVPKYLLNRRNDMDTGKDMHLIGNDLIFAVRQSINRDVTLRVWRGYRHQYGQ 140
Query: 435 RV 440
+V
Sbjct: 141 KV 142
>UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S13P -
Nanoarchaeum equitans
Length = 153
Score = 45.2 bits (102), Expect = 0.001
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +3
Query: 258 MSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLR 437
+ NP +Y IP W NR++D GK L ++ + D++R +I + RG RH GL
Sbjct: 72 LRNPWKYGIPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREGLP 131
Query: 438 V 440
V
Sbjct: 132 V 132
Score = 33.5 bits (73), Expect = 3.4
Identities = 15/61 (24%), Positives = 33/61 (54%)
Frame = +1
Query: 82 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITSC 261
I+ I + ++DG + + + + GV +++ V ID ++ G ++EE+EK+ +
Sbjct: 13 IVHIADVDLDGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDAL 72
Query: 262 R 264
R
Sbjct: 73 R 73
>UniRef50_A6SEJ9 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 319
Score = 36.7 bits (81), Expect = 0.36
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = -3
Query: 308 LPI*EPVWYLILPRIRHDVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVI 135
LP+ P Y++ P +V F SSS H RLSR S +YLR P++ I
Sbjct: 154 LPLALPSVYILSPHPFPEVDTFVASSSAHYHLRLSRYASPMKEAFTQYLRDHPVVKAI 211
>UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_7513_8304 - Giardia lamblia ATCC
50803
Length = 263
Score = 36.3 bits (80), Expect = 0.48
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 228 CAFASTLVKINVGFFENNVGVPPANTFDSRHRKHNLSFAIDVRIHDTKNMLKFV-WNDQR 52
C S V +NVGF E N+G N +S A+DV + T+ + V ND+
Sbjct: 104 CELTSAFVNVNVGFLEGNIGKAAPNPLNSDKGTLKYDLALDVCVKHTQEVPVVVGLNDRC 163
Query: 51 H 49
H
Sbjct: 164 H 164
>UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4;
Endopterygota|Rep: ENSANGP00000013280 - Anopheles
gambiae str. PEST
Length = 183
Score = 35.5 bits (78), Expect = 0.84
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +1
Query: 106 IDGKRKVMFAMTAIKGVGRRYSNIVLK---KADI-DLDKRAGECTEEEVEK 246
+D K KV A G+GR +S +LK K I DLD AGE T EE+EK
Sbjct: 1 MDLKNKVALVTGAATGLGRAFSEELLKHGAKVVICDLDSDAGELTVEELEK 51
>UniRef50_Q6UVP6 Cluster: Ribosomal protein S13; n=1;
Pseudendoclonium akinetum|Rep: Ribosomal protein S13 -
Pseudendoclonium akinetum (Green alga)
Length = 119
Score = 34.7 bits (76), Expect = 1.5
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 91 IMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITSCRIL 270
++ +N+ + FA+ AI GVG++ + V I+ R E ++E + SCR L
Sbjct: 3 LLGSNVSENKAAFFALQAIYGVGQKSAAAVCNLVGINPQTRLRELNSTQLELLTKSCRRL 62
>UniRef50_A5FGA8 Cluster: DNA-(Apurinic or apyrimidinic site) lyase;
n=1; Flavobacterium johnsoniae UW101|Rep: DNA-(Apurinic
or apyrimidinic site) lyase - Flavobacterium johnsoniae
UW101
Length = 216
Score = 33.5 bits (73), Expect = 3.4
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 64 PDKFQHILRIMNT--NIDGKRKVMFAMTAIKGVGRRYSNIVLKKAD 195
P K Q +L I +T N + M +TA+KG+GR+ +N++L++ +
Sbjct: 87 PTKAQWLLEIAHTIQNDNDIPLTMSGLTALKGIGRKSANVILRETE 132
>UniRef50_Q849N3 Cluster: Putative uncharacterized protein pSV2.07;
n=1; Streptomyces violaceoruber|Rep: Putative
uncharacterized protein pSV2.07 - Streptomyces
violaceoruber
Length = 652
Score = 33.1 bits (72), Expect = 4.5
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -3
Query: 332 VFTINNILLPI*EPVWYLILPRIRHDVIIFSTSSSVHSPARLSRSMSAFLRTMLE 168
V T+N + +P WY + + I+ TS S+H+PA+ S ++A + +E
Sbjct: 281 VTTLNTAQAHLDQPSWYNPADALNRLLEIYLTSRSIHAPAKDSTGLTALISPAVE 335
>UniRef50_UPI00004999F3 Cluster: hypothetical protein 23.t00039;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 23.t00039 - Entamoeba histolytica HM-1:IMSS
Length = 592
Score = 32.7 bits (71), Expect = 5.9
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Frame = -3
Query: 398 NLLEPLQIFTEF*IQVGGGQLAVFTINNIL-LPI*EPVWYLILPRIRHDVIIF-----ST 237
NL + LQ T F I G F I +L L I P+ IL I + I + +
Sbjct: 312 NLYQQLQYSTHFYIPSGLTSYINFPIIILLILAITAPIILFILISIIPESICYIFKSYTD 371
Query: 236 SSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAV----IANITFRLPSMFVF 96
SSS SP +L FL T E PT + V I + T +P +F+F
Sbjct: 372 SSSKSSPKQLMVLSDIFLSTKTEISHPTTIYLVIFYFILSTTLYIPYLFLF 422
>UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium
loti|Rep: Mll1963 protein - Rhizobium loti
(Mesorhizobium loti)
Length = 315
Score = 32.3 bits (70), Expect = 7.8
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 225 AFASTLVKINVGFFENNVG-VPPANTFDSRHRK-HNLSFAIDVRIHDTKNML 76
AFA T V+ VGF++ VG + +D +K H+ +F DV + DTK L
Sbjct: 23 AFAETPVEPTVGFYKYTVGDIEVTAIYDGIWKKPHDPAFIKDVSVEDTKAAL 74
>UniRef50_Q18YK0 Cluster: DNA glycosylase; n=2; Desulfitobacterium
hafniense|Rep: DNA glycosylase - Desulfitobacterium
hafniense (strain DCB-2)
Length = 273
Score = 32.3 bits (70), Expect = 7.8
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 118 RKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITS-CRIL 270
+ + T + G+G Y++ L +A I ++ A T+EE+EK+ + C++L
Sbjct: 159 KAALLDQTLVAGIGNIYADEALFRAGIAPERCANSLTKEEIEKLYPAICQVL 210
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,078,352
Number of Sequences: 1657284
Number of extensions: 10826541
Number of successful extensions: 31024
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 30168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31015
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36655321736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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