Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1120
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 117 1e-27
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 117 1e-27
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 29 0.35
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 29 0.46
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 4.3
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 5.7
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 7.5
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 25 9.9
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 117 bits (282), Expect = 1e-27
Identities = 53/69 (76%), Positives = 62/69 (89%)
Frame = +1
Query: 49 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 228
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 229 EEEVEKIIT 255
EE+E+I+T
Sbjct: 61 TEELERIVT 69
Score = 96.7 bits (230), Expect = 2e-21
Identities = 44/62 (70%), Positives = 51/62 (82%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
I+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ HRG+RH L
Sbjct: 70 IIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDL 129
Query: 435 RV 440
RV
Sbjct: 130 RV 131
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 117 bits (282), Expect = 1e-27
Identities = 53/69 (76%), Positives = 62/69 (89%)
Frame = +1
Query: 49 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 228
MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 229 EEEVEKIIT 255
EE+E+I+T
Sbjct: 61 TEELERIVT 69
Score = 96.7 bits (230), Expect = 2e-21
Identities = 44/62 (70%), Positives = 51/62 (82%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
I+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ HRG+RH L
Sbjct: 70 IIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDL 129
Query: 435 RV 440
RV
Sbjct: 130 RV 131
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 29.5 bits (63), Expect = 0.35
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 97 NTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITSCRILGS 276
NTN ++V T G ++ S LKK D+ + +CT +I+ + + L S
Sbjct: 658 NTNAKASKRVYITFT---GYDKKPSIDNLKKLDMSITSNPSKCTHLIAPRILRTSKFLCS 714
Query: 277 IRY 285
I Y
Sbjct: 715 IPY 717
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 29.1 bits (62), Expect = 0.46
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 375 DLERLKKIRAHRGMRHYWGLRV 440
D+ RL IR +RGMRH GL V
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPV 97
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 378 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 277
N H ++PS R S+ +Y P Y ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 112 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 204
GK+KV+ I + R+YSN+ +KA+ L
Sbjct: 10 GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 248 IFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIANITFRLPSMF 102
I SSS S A + +S+FL+ +L+ + TP N + + S F
Sbjct: 274 ICCNSSSFWSAADSFKEVSSFLKNLLKNVTATPFEVSDMNWAYIIASFF 322
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +2
Query: 344 LLQLGFKTP*RFGEAQEDSRSQRDATLLGPSCAWSAH*DYWQERKNCW 487
L L FK+ + D +R AT + S W A+ YWQ W
Sbjct: 43 LRHLPFKSSINEETREWDLSGRRGATTMYSSMNWLANSTYWQTTLVGW 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,378
Number of Sequences: 5004
Number of extensions: 47032
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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