Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1120
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 108 3e-24
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 108 3e-24
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 108 3e-24
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 79 3e-15
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 31 0.62
03_01_0404 + 3138624-3140096 31 0.62
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 29 2.5
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 29 2.5
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 5.8
03_01_0646 + 4742398-4742994,4743681-4744085 27 7.6
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 108 bits (260), Expect = 3e-24
Identities = 44/62 (70%), Positives = 56/62 (90%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGL
Sbjct: 66 VVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGL 125
Query: 435 RV 440
RV
Sbjct: 126 RV 127
Score = 101 bits (243), Expect = 3e-22
Identities = 42/63 (66%), Positives = 58/63 (92%)
Frame = +1
Query: 67 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 246
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 247 IIT 255
++T
Sbjct: 63 LMT 65
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 108 bits (260), Expect = 3e-24
Identities = 44/62 (70%), Positives = 56/62 (90%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGL
Sbjct: 86 VVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGL 145
Query: 435 RV 440
RV
Sbjct: 146 RV 147
Score = 92.7 bits (220), Expect = 2e-19
Identities = 39/57 (68%), Positives = 52/57 (91%)
Frame = +1
Query: 49 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAG 219
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR+G
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSG 57
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 108 bits (260), Expect = 3e-24
Identities = 44/62 (70%), Positives = 56/62 (90%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGL
Sbjct: 88 VVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGL 147
Query: 435 RV 440
RV
Sbjct: 148 RV 149
Score = 90.6 bits (215), Expect = 7e-19
Identities = 47/115 (40%), Positives = 69/115 (60%)
Frame = +1
Query: 49 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 228
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 229 EEEVEKIITSCRILGSIRYQTGS*IGKRILLMVNTAS*PPPTWIQNSVKIWRGSR 393
+I ++G T + + + ++ N P W N K ++ R
Sbjct: 61 PPSRRQISV---MVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGR 112
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/51 (68%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
Frame = +3
Query: 291 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 440
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 57
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 31.1 bits (67), Expect = 0.62
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 369 REDLERLKKIRAHRGMRHYWGLRV 440
R +ERLK+IR +RG+RH GL V
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPV 131
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.62
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 321 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 419
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 382 RGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVY 492
RG + L C+++ F+C +STL + ELL++
Sbjct: 184 RGQIEYELYPLCNLSFFFICYLSTLLIFCNANELLLF 220
>01_07_0179 -
41814886-41815074,41815172-41815222,41815365-41815469,
41815852-41815945,41816056-41816150,41816581-41816700,
41816737-41816832,41817272-41817569,41817777-41817853,
41818932-41819447
Length = 546
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 379 WRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELL 486
W+ FA+ G D+ F+ + T LLA EE LL
Sbjct: 212 WQEESCFAIGAGTDVANLFISIKRTQLLLATEEWLL 247
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 194 SAFLRTMLEYLRPTPLIAVIANIT 123
S+FL TM EY+R P A +AN T
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKT 278
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 132 CDDGYQRCWPEVLQHCSQKSR 194
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,566,734
Number of Sequences: 37544
Number of extensions: 302440
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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