Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1120
(556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 9e-29
SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85) 32 0.27
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_30426| Best HMM Match : CXC (HMM E-Value=2.8) 28 4.5
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 28 5.9
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09) 28 5.9
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36) 27 7.8
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 123 bits (297), Expect = 9e-29
Identities = 54/69 (78%), Positives = 67/69 (97%)
Frame = +1
Query: 49 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 228
MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IKGVGRRY+NIV KKADID++KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIKGVGRRYANIVCKKADIDMNKRAGELT 60
Query: 229 EEEVEKIIT 255
E+EVE+++T
Sbjct: 61 EDEVERVVT 69
Score = 119 bits (286), Expect = 2e-27
Identities = 51/62 (82%), Positives = 57/62 (91%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
IM NPRQYKIPDWFLNRQKD DGKYSQ+ ++ LD+K+REDLERLKKIRAHRG+RHYWGL
Sbjct: 70 IMQNPRQYKIPDWFLNRQKDHKDGKYSQILANGLDNKMREDLERLKKIRAHRGLRHYWGL 129
Query: 435 RV 440
RV
Sbjct: 130 RV 131
>SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/34 (82%), Positives = 34/34 (100%)
Frame = +1
Query: 49 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIK 150
MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IK
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIK 34
>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
Length = 1459
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -3
Query: 419 SHPSVSANLLEPLQIFTEF*IQVGGGQLAVFTIN-NILLPI*EPVWYLILPRIRHDVIIF 243
+HPSVS +L + + T + V GQ + + ++ + + + VWY P + DV+ F
Sbjct: 874 THPSVSVSLGQSIWYHTHLSVSVSLGQSIWYNTHLSVSVSLCQSVWYHTHPSVLQDVLDF 933
Query: 242 STSSSVHSPARLSRS 198
+ ++ + S+S
Sbjct: 934 YLALALCHTVQASKS 948
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 264 NPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 407
+PR K PD LN KD +GK T+ + ++L D ++ K R+H
Sbjct: 657 DPRS-KHPDPSLNVNKDSEEGKTQAQTTDEIIAQLISDHKKKKNARSH 703
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 279 KIPDWFLNRQKDIVDGKYSQLTSSNLD-SKLREDLERLKKIRAHRGMR 419
K+ W L+ V+ KY + S + + + LRE+LE +KK+R G++
Sbjct: 2757 KLHQWLLD-----VENKYKEKASDSANVAVLREELEDIKKLRQDMGIQ 2799
>SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)
Length = 410
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = -2
Query: 222 FASTLVKINVGFFENNVGVPPANTFDSRHRKHNLSFAIDVRIHDTKNMLKFVW----NDQ 55
+ +T+ + + E VG+ N F +R+R H SF + ++ + K++W ND
Sbjct: 313 YQATVTRKDKNTSETYVGLTE-NAFKTRYRNHTASFR-HAKHRNSTELSKYIWSLKDNDI 370
Query: 54 RHF 46
HF
Sbjct: 371 EHF 373
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -3
Query: 239 TSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIAN 129
T +++HS + ++++ F+ + +E RPT L ++ N
Sbjct: 826 TDTALHSKGKDNKTLDLFVSSRVEKYRPTKLHEIVGN 862
>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
Length = 458
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 70 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 249
+F+H ++ + KRK + + +NI K DIDL G CTE+E+ ++
Sbjct: 59 EFRHEVQASTRKVSSKRKPIRKRRTVT------ANISATKYDIDL---LGYCTEQEIRRV 109
Query: 250 I 252
+
Sbjct: 110 V 110
>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
Length = 1290
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 297 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 392
L R+K + + KY + +N D K RE++E LK
Sbjct: 873 LRREKKVFE-KYQKAARANPDKKEREEIESLK 903
>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = +3
Query: 336 QLTSS--NLDSKLREDLERLKKI 398
QLTS N+D K+RE LE++KK+
Sbjct: 72 QLTSEEDNVDPKIREGLEKIKKL 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,484,315
Number of Sequences: 59808
Number of extensions: 342114
Number of successful extensions: 946
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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