Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1120
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...   110   8e-25
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z69635-2|CAA93462.1|  555|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z69635-1|CAA93459.1|  515|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    27   9.1  

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score =  110 bits (264), Expect = 8e-25
 Identities = 48/62 (77%), Positives = 54/62 (87%)
 Frame = +3

Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
           IM NP QYKIP+WFLNRQKDI DGK  QL S+ +D+KLREDLER+KKIR HRG+RHYWGL
Sbjct: 70  IMQNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLHRGLRHYWGL 129

Query: 435 RV 440
           RV
Sbjct: 130 RV 131



 Score =  106 bits (254), Expect = 1e-23
 Identities = 46/69 (66%), Positives = 61/69 (88%)
 Frame = +1

Query: 49  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 228
           MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ +  +KAD+D++KRAGE T
Sbjct: 1   MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60

Query: 229 EEEVEKIIT 255
           EE+ +KI+T
Sbjct: 61  EEDFDKIVT 69


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 370 VKIWRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVYQR 498
           +K +R   + AL     +TGA + + +TL LLA    LL  QR
Sbjct: 137 IKKYRWGMKMALLFHLCVTGALLSITNTLHLLASGYHLLKRQR 179


>Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical
           protein LLC1.3 protein.
          Length = 495

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 109 DGKRKVMFAMTAIKGVGRR-YS-NIVLKKADIDLDKRAGECTEEEVEKIITSCRILGSI 279
           DGK++ +   T +  VGRR Y+  + L    IDLD R      E  +  + S   +G +
Sbjct: 283 DGKKQTLECDTLLVSVGRRPYTEGLGLSNVQIDLDNRGRVPVNERFQTKVPSIFAIGDV 341


>Z69635-2|CAA93462.1|  555|Caenorhabditis elegans Hypothetical
           protein F19B6.1b protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 211 RAGECTEEEVEKIITSCRILGSIRYQT 291
           RAGEC E  +  I+  C ++G I  QT
Sbjct: 412 RAGECMETALRSIVKDC-VIGKILIQT 437


>Z69635-1|CAA93459.1|  515|Caenorhabditis elegans Hypothetical
           protein F19B6.1a protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 211 RAGECTEEEVEKIITSCRILGSIRYQT 291
           RAGEC E  +  I+  C ++G I  QT
Sbjct: 372 RAGECMETALRSIVKDC-VIGKILIQT 397


>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 264 NPRQYKIPDWFLNRQKDIVDGKYS-QLTSSNLDSKLREDL 380
           NP  YK+ D++ N+  +++  K + +L S++L  K +++L
Sbjct: 40  NPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKDKKNL 79


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 132  CDDGYQRCWPEVLQHCS 182
            C + YQ CWP +L  CS
Sbjct: 1512 CREYYQICWPPILLACS 1528


>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
            roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 163  RYSNIVLKKADIDLDKRAGECTEEEVEKIITSCRI 267
            RY+ ++++KA +       E  +EE+EK I + RI
Sbjct: 1449 RYATLLIRKASVAGRHTDREIRKEEIEKYIEAARI 1483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,395,513
Number of Sequences: 27780
Number of extensions: 264816
Number of successful extensions: 776
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)