Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1120
(556 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C) 113 6e-26
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi... 113 6e-26
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc... 113 6e-26
At4g19390.1 68417.m02854 expressed protein 29 1.6
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ... 29 2.1
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP... 28 3.6
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ... 27 8.4
>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
Length = 152
Score = 113 bits (273), Expect = 6e-26
Identities = 49/62 (79%), Positives = 56/62 (90%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
I++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGL
Sbjct: 70 IVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGL 129
Query: 435 RV 440
RV
Sbjct: 130 RV 131
Score = 101 bits (243), Expect = 2e-22
Identities = 42/69 (60%), Positives = 61/69 (88%)
Frame = +1
Query: 49 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 228
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 229 EEEVEKIIT 255
E++ ++T
Sbjct: 61 AAEIDNLMT 69
>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
to ribosomal protein S18 GI:38422 from [Homo sapiens]
Length = 152
Score = 113 bits (273), Expect = 6e-26
Identities = 49/62 (79%), Positives = 56/62 (90%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
I++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGL
Sbjct: 70 IVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGL 129
Query: 435 RV 440
RV
Sbjct: 130 RV 131
Score = 101 bits (243), Expect = 2e-22
Identities = 42/69 (60%), Positives = 61/69 (88%)
Frame = +1
Query: 49 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 228
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 229 EEEVEKIIT 255
E++ ++T
Sbjct: 61 AAEIDNLMT 69
>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
gb|R30430 come from this gene
Length = 152
Score = 113 bits (273), Expect = 6e-26
Identities = 49/62 (79%), Positives = 56/62 (90%)
Frame = +3
Query: 255 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 434
I++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGL
Sbjct: 70 IVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGL 129
Query: 435 RV 440
RV
Sbjct: 130 RV 131
Score = 101 bits (243), Expect = 2e-22
Identities = 42/69 (60%), Positives = 61/69 (88%)
Frame = +1
Query: 49 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 228
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 229 EEEVEKIIT 255
E++ ++T
Sbjct: 61 AAEIDNLMT 69
>At4g19390.1 68417.m02854 expressed protein
Length = 273
Score = 29.5 bits (63), Expect = 1.6
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +1
Query: 220 ECTEEEVEKIITSCRILGSIRYQTGS*IGKRILLMVNTAS*PPPTWIQNSVKIWRGSRRF 399
E EE +EK+I SCR + + GS +G +L + +++Q SV RG F
Sbjct: 95 EALEEGIEKVIYSCRFM-TFLGTLGSLLGS-VLCFIKGCMYVVDSFLQYSVN--RGKVIF 150
Query: 400 ALTEGCDI 423
L E DI
Sbjct: 151 LLVEAIDI 158
>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 402
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 246 FFNLFFCAFASTLVKINVGFFENNVGVPPANT 151
FFNLFF A +KI +G F ++ +PP+++
Sbjct: 34 FFNLFFYAQVHENLKIELGIFSRSI-LPPSSS 64
>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 351
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 324 GKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 419
G YS + NLD+ L+R+KK+ A G R
Sbjct: 26 GGYSVVVVDNLDNSSAVSLQRVKKLAAEHGER 57
>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
(CS13) ribosomal protein S13 precursor, chloroplast
Arabidopsis thaliana, PIR:S59594; identical to cDNA
ribosomal protein S13 GI:1515106
Length = 169
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 378 LERLKKIRAHRGMRHYWGL 434
++RLK+I+ +RG+RH GL
Sbjct: 122 IKRLKEIQCYRGVRHIQGL 140
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,664,100
Number of Sequences: 28952
Number of extensions: 244171
Number of successful extensions: 681
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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