Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1118
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   5.3  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   5.3  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   5.3  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   6.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.2  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 300 NMMQIRIPVTVSEITVGNSSGTDRCRSTCLVRYG*YV 190
           +++ ++  +  S++  G SSG    RST   RY  +V
Sbjct: 149 HVLMVQRMIGSSQLGTGGSSGYQYLRSTLSDRYKVFV 185


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 300 NMMQIRIPVTVSEITVGNSSGTDRCRSTCLVRYG*YV 190
           +++ ++  +  S++  G SSG    RST   RY  +V
Sbjct: 309 HVLMVQRMIGSSQLGTGGSSGYQYLRSTLSDRYKVFV 345


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 300 NMMQIRIPVTVSEITVGNSSGTDRCRSTCLVRYG*YV 190
           +++ ++  +  S++  G SSG    RST   RY  +V
Sbjct: 309 HVLMVQRMIGSSQLGTGGSSGYQYLRSTLSDRYKVFV 345


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 546 SVCRYVQRNCRFICHCESCVC*VSIIVIQKVLLTKLSSI 430
           +  R+ + N R I    + V    I+++QK    KLS +
Sbjct: 307 TAARFFELNRRTILGVSNAVITFLIVMVQKASYEKLSPV 345


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 325 EHVRSTAKKHDADQNTSN 272
           E V+  AKK ++D N +N
Sbjct: 448 EVVQEEAKKEESDSNNNN 465


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,131
Number of Sequences: 336
Number of extensions: 3248
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)