Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1118
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   2.5  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    27   2.5  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    27   2.5  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    26   4.3  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   7.5  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   9.9  

>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 135 KQANKKASKFPWGRKIDTSEVVVTCKIRRPVRS 37
           K  N+ + +FP+  KI       TCK  +P RS
Sbjct: 139 KNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 672 YVAPQYKMAVRGQSRGIPCQTVIQSVS 592
           Y AP+Y++ VR  +R + CQ V   V+
Sbjct: 44  YNAPKYRLVVRFSNRFVTCQIVSSRVN 70


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 672 YVAPQYKMAVRGQSRGIPCQTVIQSVS 592
           Y AP+Y++ VR  +R + CQ V   V+
Sbjct: 44  YNAPKYRLVVRFSNRFVTCQIVSSRVN 70


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 188 LDERLLDGA*LIVADFTTSKQTRKQASFRGEEKLTHL 78
           LD  L D +  +  D+T  K+++K  S   E  L HL
Sbjct: 145 LDRALCDQSNQLFTDYTVKKKSKKNKSQLEENGLNHL 181


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 91  FSSPRKLACFLVCLLVVKSATMSYAP 168
           FS   K  CF+ CLL++  +  +Y+P
Sbjct: 91  FSETEKSECFIKCLLLLILSLGNYSP 116


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 186 EVHINRSAPNTWIGICLFP 242
           ++ ++ SAP  WI +CL P
Sbjct: 752 KLSLDSSAPENWISLCLQP 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,031
Number of Sequences: 5004
Number of extensions: 54982
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)