Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1118
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0816 + 7935399-7936286,7936842-7936997,7937124-7937335,793...    31   1.1  
11_04_0440 - 17772550-17772567,17772644-17772766,17772954-177732...    30   1.5  
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529...    28   5.9  

>08_01_0816 +
           7935399-7936286,7936842-7936997,7937124-7937335,
           7937473-7937665
          Length = 482

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 192 VPR*TSTGWCIAHCRGFHNKQANKKASKFPWG 97
           VPR   T  C+   RG+ +K AN +  +F WG
Sbjct: 312 VPRCVYTSTCLYEYRGWDSKAANTEHRQFTWG 343


>11_04_0440 -
           17772550-17772567,17772644-17772766,17772954-17773239,
           17773320-17773455,17773787-17773998,17775213-17775574,
           17775670-17775700,17775807-17775868
          Length = 409

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 437 VQSNTSDDGNYRLAIPGGAAVDIRSGIRTLLSLA*RV 327
           V + TSDD  Y + +PG + ++I+S +R L   A ++
Sbjct: 12  VANLTSDDSFYPVIVPGNSKIEIQSRVRNLTVYAIKI 48


>02_04_0496 +
           23446039-23446964,23452755-23452845,23452946-23452996,
           23453080-23453206,23453390-23453425,23453443-23453473,
           23453488-23453576,23454341-23454462,23455601-23455778,
           23458343-23458470,23458592-23458658,23459167-23459272,
           23459365-23459473,23459965-23460084,23460187-23460220,
           23460471-23460547,23460640-23460692,23460847-23460898,
           23461270-23461767
          Length = 964

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +3

Query: 123 CLLACCEIRDNELCT---IQ*TFIEVHINRSAPNTWIGICLFPMNFR 254
           CLL+CC   D   CT   I   + E+   R   N W+ +   P  +R
Sbjct: 110 CLLSCCGPMDPTSCTVLVIDLAYPELWYCRPGDNQWVKLHQHPYQYR 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,507,902
Number of Sequences: 37544
Number of extensions: 371477
Number of successful extensions: 885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)