Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1118
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)                    31   0.64 
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)                   30   1.5  
SB_54366| Best HMM Match : Eco57I (HMM E-Value=5.8)                    30   2.0  
SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13)              29   3.4  
SB_35902| Best HMM Match : DUF567 (HMM E-Value=9.7)                    29   4.5  
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)             28   6.0  
SB_14656| Best HMM Match : LEA_4 (HMM E-Value=7.3)                     28   7.9  

>SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)
          Length = 815

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 321 MFEVQRKNMMQIRIPVTVSEITVGNSSGTDRCRSTCLVRYG 199
           ++    +N+ Q+ + +  S++T+  SSG D C ST L   G
Sbjct: 183 IYSAMSRNLKQVGVVLFNSKVTLAGSSGVDECYSTRLAPAG 223


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -3

Query: 652  NGGTWTESWHSVSDSHSVRIRRSVRLSQ*VSDSQSVGLSVC-ATKLSVYLSL*KLCVLS 479
            +G  W  + +S  + +   +R+SVR S   S  QSV  SVC + +LSV  S+  L  LS
Sbjct: 869  SGTAWAPNGNSNDNDYLQSVRQSVRQSVRQSVRQSVRQSVCQSVRLSVCPSVCPLVCLS 927


>SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)
          Length = 728

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 153 CRGFHNKQANKKASKFPWGRKIDTSEVVVTCKIRR 49
           C     K+A +K    PW +KID  +++   +IRR
Sbjct: 481 CAQAKTKKAKRKKQILPWRKKIDVKKIICREEIRR 515


>SB_54366| Best HMM Match : Eco57I (HMM E-Value=5.8)
          Length = 212

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = -3

Query: 394 SLVALPSTSEVGSGLYSHWRDVFEHVR-----STAKKHDADQNTSNGI*DH 257
           +LV    T   GSG+  HW D  EH R      T+ ++    ++ +GI  H
Sbjct: 142 TLVRYSRTHSPGSGITKHWYDTQEHTRLDLAYKTSVRYSRTHSSGSGITKH 192


>SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13)
          Length = 479

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 200 VDMYLDERLLDGA*LIVADFTTSKQTRKQASFRGEEKL 87
           VD++LD   LDG    + D    + + K ++F+G E+L
Sbjct: 172 VDLFLDVAQLDGENYFMCDLENVQVSGKNSAFQGAERL 209


>SB_35902| Best HMM Match : DUF567 (HMM E-Value=9.7)
          Length = 205

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/46 (43%), Positives = 23/46 (50%)
 Frame = -1

Query: 660 QYKMAVRGQSRGIPCQTVIQSVSDGRSVSVSKSLTVSQSVCRYVQR 523
           Q   +VR   R  PC  V QSV   RSV  S    VSQSV + V +
Sbjct: 2   QSNQSVRRSVRQTPCSPVSQSVR--RSVRQSACSPVSQSVSQAVSK 45


>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 487 VLSFNNCYSKSFIN*TEFNRIRVMTETTA*PSLVALPSTSEVGSGLY 347
           +L F +  + +F+  T  N  R + E +  PS+V+  S SEV   +Y
Sbjct: 841 ILGFRDTKTHNFLPLTHRNFTRAVAELSLKPSMVSKTSASEVVGAVY 887


>SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)
          Length = 213

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
 Frame = -1

Query: 636 QSRGIPC-QTVIQSVSDGRSVSVSKSL--TVSQSVCRYVQRN 520
           Q+ G  C Q+V QSVS   S SVS+S+  +VSQSV + V ++
Sbjct: 9   QANGEGCYQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQS 50


>SB_14656| Best HMM Match : LEA_4 (HMM E-Value=7.3)
          Length = 166

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
 Frame = -1

Query: 615 QTVIQSVSDGRSVSVSKSLT--VSQSVCRYVQRNCR 514
           Q+V QSVS   S SVS+S++  VSQSV + V ++ R
Sbjct: 64  QSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVR 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,697,389
Number of Sequences: 59808
Number of extensions: 457307
Number of successful extensions: 1576
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)