Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1118
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.1  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   8.1  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   8.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 27  SPDTNAPDVLSYRSRRLQMCQFFFPTETCLL 119
           S D   PD+  Y S  +   Q   P  TCL+
Sbjct: 121 SDDIWVPDISVYNSGDMTFDQTGIPPTTCLV 151


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -1

Query: 555 VSQSVCRYVQRNCRFICHCES-CVC 484
           VS S  R  Q  CR+  HC + C C
Sbjct: 725 VSASTARSEQFLCRYEAHCFALCHC 749


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 99  PTETCLLSCLLACCEIRDNE 158
           P+ TC + CLL    + D+E
Sbjct: 68  PSITCYMYCLLEAFSLVDDE 87


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 99  PTETCLLSCLLACCEIRDNE 158
           P+ TC + CLL    + D+E
Sbjct: 68  PSITCYMYCLLEAFSLVDDE 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,844
Number of Sequences: 438
Number of extensions: 3778
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)