Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1118
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78880.1 68414.m09195 balbiani ring 1-related / BR1-related c...    31   0.70 
At1g16860.1 68414.m02035 merozoite surface protein-related conta...    31   0.70 
At3g63380.1 68416.m07135 calcium-transporting ATPase, plasma mem...    28   6.5  
At3g29640.1 68416.m03732 hypothetical protein contains similarit...    27   8.6  
At2g24710.1 68415.m02952 glutamate receptor family protein (GLR2...    27   8.6  
At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putati...    27   8.6  

>At1g78880.1 68414.m09195 balbiani ring 1-related / BR1-related
           contains weak similarity to BR1 [Chironomus tentans]
           gi|7042|emb|CAA45607
          Length = 468

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 192 VPR*TSTGWCIAHCRGFHNKQANKKASKFPWGRKIDTSEVV 70
           VPR   T  C+   RG+ +K AN    +F WG +     VV
Sbjct: 298 VPRCVYTSTCLYEYRGWGSKPANASHRRFTWGLRSAERHVV 338


>At1g16860.1 68414.m02035 merozoite surface protein-related contains
           weak similarity to merozoite surface protein [Plasmodium
           falciparum] gi|12043655|gb|AAG47601
          Length = 474

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 192 VPR*TSTGWCIAHCRGFHNKQANKKASKFPWGRKIDTSEVV 70
           VPR   T  C+   RG+ +K AN     F WG +     VV
Sbjct: 304 VPRCVYTSTCLYEYRGWGSKPANSSHRHFTWGLRSSERHVV 344


>At3g63380.1 68416.m07135 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca(2+)-ATPase, putative
           (ACA12) identical to SP|Q9LY77 Potential
           calcium-transporting ATPase 12, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 12) {Arabidopsis
           thaliana}; similar to SP|Q9LF79 Calcium-transporting
           ATPase 8, plasma membrane-type (EC 3.6.3.8)
           (Ca2+-ATPase, isoform 8) {Arabidopsis thaliana};
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 1033

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 643 TWTESWHSVSDSHSVRIRRSVRLSQ*VSDSQSVGLSVCATKLSVYL 506
           TW ++  S++   S R    VRL    S    +GL+V A  L V L
Sbjct: 319 TWGQTMSSINQDSSERTPLQVRLDTLTSTIGKIGLTVAALVLVVLL 364


>At3g29640.1 68416.m03732 hypothetical protein contains similarity
           to hypothetical proteins
          Length = 171

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 414 RKLPLSHPWWRCRRHQKWDQDSTLTG 337
           +K  L H W + R  QKW + +T+ G
Sbjct: 134 KKFNLEHTWRKLRYDQKWCEAATIKG 159


>At2g24710.1 68415.m02952 glutamate receptor family protein (GLR2.3)
           plant glutamate receptor family, PMID:11379626
          Length = 895

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 3   QRDPNPAASPDTNAPDVLSYRSRRLQMCQFFFPTETCLLSCLLA 134
           Q  P+P  +PD N     S+ SR+L +  F F     LL C++A
Sbjct: 806 QSCPDPITNPDPNP----SFTSRQLDIDSFLFLFVGVLLVCVMA 845


>At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putative
           / glucose phosphomutase, putative strong similarity to
           SP|P93805 Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2)
           (Glucose phosphomutase 2) (PGM 2) {Zea mays}; contains
           InterPro accession IPR006352: Phosphoglucosamine mutase
          Length = 583

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 190 YISTVAHQTRGSASVCSR*ISDRDLRYRYWYSDLHHVFSLY-FEHVQTRHASE 345
           ++S +AH+ +G+    ++ +S  D+  ++W +   H ++ Y +E+V    A E
Sbjct: 408 WMSILAHKNKGNIDGNAKLVSVEDIVRQHWATYGRHYYTRYDYENVDAGKAKE 460


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,573,352
Number of Sequences: 28952
Number of extensions: 291988
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)