Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1117
         (658 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7HLW7 Cluster: Putative uncharacterized protein; n=1; ...    36   1.1  
UniRef50_A5K1E6 Cluster: Putative uncharacterized protein; n=1; ...    35   1.5  
UniRef50_Q8IM14 Cluster: Putative uncharacterized protein; n=1; ...    34   2.6  
UniRef50_O51329 Cluster: Putative uncharacterized protein BB0354...    33   6.0  
UniRef50_A3M088 Cluster: Vacuolar targeting, actin-related prote...    33   6.0  

>UniRef50_A7HLW7 Cluster: Putative uncharacterized protein; n=1;
           Fervidobacterium nodosum Rt17-B1|Rep: Putative
           uncharacterized protein - Fervidobacterium nodosum
           Rt17-B1
          Length = 471

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 16/49 (32%), Positives = 33/49 (67%)
 Frame = +3

Query: 282 VKRIKVTKNLIVGLNHFTLISLNSTGIDIQTYHTSIYKDGNSVFTRYRS 428
           +++ ++ KNLI+ +    L+SLN   ++++T  ++IY  G+S+F+ Y S
Sbjct: 1   MEKRRINKNLILSIALIILLSLNVFSLEVKT--SAIYNYGDSIFSLYNS 47


>UniRef50_A5K1E6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 1561

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +1

Query: 508 VYISNKLGPKQINRRHNYSLFRFICGSSKLWLYFTFLLIKFI 633
           +YI    GP       NY L++ +CG+  +++YF FLL KFI
Sbjct: 423 IYICTNDGPMS---NFNYHLYKILCGTEDIYMYF-FLLKKFI 460


>UniRef50_Q8IM14 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1702

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +1

Query: 508 VYISNKLGPKQINRRHNYSLFRFICGSSKLWLYFTFLLIKFI 633
           +YIS   GP       NY LF+ +C + ++++YF FL  KFI
Sbjct: 370 LYISTMNGPMS---NFNYHLFKILCSNDEIYMYF-FLFKKFI 407


>UniRef50_O51329 Cluster: Putative uncharacterized protein BB0354;
           n=3; Borrelia burgdorferi group|Rep: Putative
           uncharacterized protein BB0354 - Borrelia burgdorferi
           (Lyme disease spirochete)
          Length = 346

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 25/81 (30%), Positives = 39/81 (48%)
 Frame = -3

Query: 278 DSLRIVFVKYRAMGIITLVIALWLLMFYSLN*IKYAYLMYDVRMCLFNLELSMI*ESMPL 99
           DSLR++F+    +    L+  L+ LMF     +KY +L ++  +  ++L  +    S PL
Sbjct: 33  DSLRLIFL---IICRFILIFCLFSLMFICTFYLKYKFLYFNFSIFSYSLYYNAYIYSFPL 89

Query: 98  ELVKLFCI*SVCVTGSVANES 36
            LV  F   S    G V N S
Sbjct: 90  SLVVTFMRISCPFYGIVLNSS 110


>UniRef50_A3M088 Cluster: Vacuolar targeting, actin-related protein;
           n=5; Saccharomycetales|Rep: Vacuolar targeting,
           actin-related protein - Pichia stipitis (Yeast)
          Length = 775

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
 Frame = +3

Query: 222 DQCDNTHSSIFNKNNSQAVNVKRIKVTKNL----IVGLNHFTLISLNSTGIDIQTYHTSI 389
           D+ DN H  I  KN+   VNV+RI+V + L    I GL+   +  ++S  ++ +++ +S 
Sbjct: 621 DEIDN-HPEIIRKNHQIHVNVERIRVPEILFQPHIAGLDQAGISEISSDLLN-RSFGSSF 678

Query: 390 YKDGNSV 410
           Y+ G+S+
Sbjct: 679 YEGGDSL 685


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,709,737
Number of Sequences: 1657284
Number of extensions: 10990370
Number of successful extensions: 21988
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21978
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)