Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1117
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    31   0.15 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.4  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    27   3.1  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   5.5  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.6  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   9.6  

>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 231 DNTHSSIFNKNNSQAVNVKRIKVTKNLIVGLNHFTLISLNSTGIDIQTY 377
           DN   + F     + + VKR++  K   VG NHF L     T +DI+T+
Sbjct: 246 DNPFKAWFLTEEDRKLVVKRLRANKQG-VGNNHFKLYQFKETMLDIRTW 293


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -3

Query: 611 VKYSQSLDDPQMNLNKE*LCLRLICFGPNLFEI 513
           VKY QSLDD +       LCL +  F PN  EI
Sbjct: 91  VKYHQSLDDFKS------LCLNIFHFDPNTLEI 117


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +2

Query: 398 RQFGFYEISVNGHYVHLEDTIL---KFPKIKLHFCIVRYLSISRIN*DQNKLTE 550
           RQ   +  ++NGHYV L  T      F K+  H   +  L    +  DQ+ + E
Sbjct: 124 RQIKSFFSALNGHYVELIQTTFGSYAFEKLLSHMAAILNLETQGVTEDQDDVLE 177


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 392 QRRQFGFYEISVNGHYVHLEDTILKFPKIKLHFCIVRYL 508
           ++  +  Y +S N HY H    I ++P I +H  + R L
Sbjct: 748 EKTDWHHYALSFN-HYTHFTSPIRRYPDIIVHRLLERSL 785


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +3

Query: 249  IFNKNNSQAVNVKRIKVTKNLIVGLNHFTLIS----LNSTGIDI 368
            I N +N  AV  K  +    L+  L H +LIS    +NS GI +
Sbjct: 1591 ILNASNIAAVQQKAEQTATTLLTVLGHDSLISEEFTINSAGIQL 1634


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 542 LTEDIIILYLD-SFVGHPNSGYISR 613
           L +DI IL  D SFVGHP   ++ R
Sbjct: 395 LMDDIEILLRDQSFVGHPKLEHLER 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,402
Number of Sequences: 5004
Number of extensions: 52381
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)