BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1117 (658 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 31 0.15 SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.4 SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 27 3.1 SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 26 5.5 SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.6 SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 9.6 >SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 508 Score = 31.1 bits (67), Expect = 0.15 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +3 Query: 231 DNTHSSIFNKNNSQAVNVKRIKVTKNLIVGLNHFTLISLNSTGIDIQTY 377 DN + F + + VKR++ K VG NHF L T +DI+T+ Sbjct: 246 DNPFKAWFLTEEDRKLVVKRLRANKQG-VGNNHFKLYQFKETMLDIRTW 293 >SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |Schizosaccharomyces pombe|chr 2|||Manual Length = 1944 Score = 27.1 bits (57), Expect = 2.4 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = -3 Query: 611 VKYSQSLDDPQMNLNKE*LCLRLICFGPNLFEI 513 VKY QSLDD + LCL + F PN EI Sbjct: 91 VKYHQSLDDFKS------LCLNIFHFDPNTLEI 117 >SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces pombe|chr 1|||Manual Length = 655 Score = 26.6 bits (56), Expect = 3.1 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Frame = +2 Query: 398 RQFGFYEISVNGHYVHLEDTIL---KFPKIKLHFCIVRYLSISRIN*DQNKLTE 550 RQ + ++NGHYV L T F K+ H + L + DQ+ + E Sbjct: 124 RQIKSFFSALNGHYVELIQTTFGSYAFEKLLSHMAAILNLETQGVTEDQDDVLE 177 >SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 25.8 bits (54), Expect = 5.5 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = +2 Query: 392 QRRQFGFYEISVNGHYVHLEDTILKFPKIKLHFCIVRYL 508 ++ + Y +S N HY H I ++P I +H + R L Sbjct: 748 EKTDWHHYALSFN-HYTHFTSPIRRYPDIIVHRLLERSL 785 >SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3131 Score = 25.0 bits (52), Expect = 9.6 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Frame = +3 Query: 249 IFNKNNSQAVNVKRIKVTKNLIVGLNHFTLIS----LNSTGIDI 368 I N +N AV K + L+ L H +LIS +NS GI + Sbjct: 1591 ILNASNIAAVQQKAEQTATTLLTVLGHDSLISEEFTINSAGIQL 1634 >SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 834 Score = 25.0 bits (52), Expect = 9.6 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = +2 Query: 542 LTEDIIILYLD-SFVGHPNSGYISR 613 L +DI IL D SFVGHP ++ R Sbjct: 395 LMDDIEILLRDQSFVGHPKLEHLER 419 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,633,402 Number of Sequences: 5004 Number of extensions: 52381 Number of successful extensions: 113 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 113 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 297805304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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