Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1117
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298...    29   2.5  
11_06_0284 + 21909758-21913645                                         28   5.7  
09_04_0520 + 18286435-18287279,18287818-18288697                       27   9.9  
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362...    27   9.9  

>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
            31029955-31030017,31031597-31031704,31031772-31031836,
            31031928-31032015,31032104-31032157,31032234-31032380,
            31033358-31033429,31034077-31034226,31034317-31034430,
            31034762-31034875,31035925-31036077,31037437-31037529,
            31038202-31038318,31038984-31039086,31039192-31039376,
            31039448-31039522,31040451-31040534,31041547-31041588,
            31041668-31041847,31042109-31042162,31042239-31042280,
            31042869-31042967,31043040-31043174,31043325-31043427,
            31045061-31045134,31045227-31045270,31045393-31045471,
            31045592-31045705,31045842-31045946,31046027-31046161,
            31046447-31046546,31046870-31046883,31046936-31047004,
            31047079-31047182,31047299-31047347,31047931-31048023,
            31048102-31048210,31048619-31048755,31048851-31048928,
            31049015-31049104,31049402-31049467,31049546-31049638,
            31049711-31049839,31050024-31050122,31051366-31051512,
            31051605-31051910
          Length = 2050

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 225  QCDNTHSSIFNKNNSQAVNVKRIKVTKNLIVGLNH-FTLISLNSTGIDIQTYHT 383
            + +  H+ +  K     +  K I++ K  I  LN   + +  NS G+D+ TY T
Sbjct: 1321 EAERLHNLLLEKQVDAEICKKEIEMQKTEIANLNQKISELVENSRGVDLSTYET 1374


>11_06_0284 + 21909758-21913645
          Length = 1295

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 312 IVGLNHFTLISLNSTGIDIQTYHTSIYKD 398
           +VGL H+T++ + S  I+   Y+  I++D
Sbjct: 732 LVGLYHYTVLEITSKQINEDNYNPQIFRD 760


>09_04_0520 + 18286435-18287279,18287818-18288697
          Length = 574

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +3

Query: 261 NNSQAVNVKRIKVTKNLIVGLNHFTLISLNSTGIDIQTYHTSIYKDGNSVF 413
           N+S+   ++ +K TK+ I+GLNHF L+    +G DI + + S      S F
Sbjct: 157 NDSRWEAIQTVK-TKDGILGLNHFRLLKKLGSG-DIGSVYLSELSGTRSYF 205


>07_01_0482 +
           3627980-3628270,3628785-3629012,3629116-3629237,
           3629747-3629966,3630434-3630576,3631004-3631141,
           3631275-3631380
          Length = 415

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 508 VYISNKLGPKQINRRHNYSLFRFICGS 588
           ++ + ++GP QI   + Y+ F+F CG+
Sbjct: 92  IHQNQQIGPDQIETLYQYAKFQFDCGN 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,596,820
Number of Sequences: 37544
Number of extensions: 256593
Number of successful extensions: 412
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)