Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1117
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31266| Best HMM Match : PKI (HMM E-Value=1)                         28   5.8  
SB_54198| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)                 28   7.7  
SB_5957| Best HMM Match : Chitin_synth_1 (HMM E-Value=9)               28   7.7  

>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
          Length = 1507

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 377 PHKYLQRRQFGFYEISVNGHYVHLEDTILKF--PKIKLHFCIVRYL 508
           P+K     Q+GF E  V+G YV +   ++ F  P+   +F + R +
Sbjct: 99  PNKEKATNQYGFVEKVVDGMYVQINSVLVSFKAPEFSANFQMSRLI 144


>SB_54198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 653 KILQKSRINFINRNVKYSQSLDDPQMNLNKE*LCLRLICF 534
           KIL+    + INR+++  Q L D Q    K+  C+  +CF
Sbjct: 89  KILEHIVCSHINRHLEAHQILSDRQHAFRKKHSCVTQLCF 128


>SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)
          Length = 510

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 653 KILQKSRINFINRNVKYSQSLDDPQMNLNKE*LCLRLICF 534
           KIL+    + INR+++  Q L D Q    K+  C+  +CF
Sbjct: 127 KILEHIVCSHINRHLEAHQILSDRQHAFRKKRSCVTQLCF 166


>SB_5957| Best HMM Match : Chitin_synth_1 (HMM E-Value=9)
          Length = 416

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 653 KILQKSRINFINRNVKYSQSLDDPQMNLNKE*LCLRLICF 534
           KIL+    + INR+++  Q L D Q    K+  C+  +CF
Sbjct: 259 KILEHIVCSHINRHLEAHQILSDRQHAFRKKRSCVTQLCF 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,345,858
Number of Sequences: 59808
Number of extensions: 346802
Number of successful extensions: 589
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)