Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1117
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine r...    31   0.54 
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    29   2.2  
Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z69794-3|CAA93680.1|  747|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine
           receptor, class i protein32 protein.
          Length = 321

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
 Frame = -3

Query: 251 YRAMGIITL---VIALWLLMF--YSLN*IKYAYLMYDVRMCLFNLELSMI*ESMPL 99
           Y ++G I+L   VI + L++F  Y L+  KY  L Y V    + L+L+++ + MPL
Sbjct: 15  YYSIGFISLIFNVITILLIVFKSYKLDSFKYYLLAYQVSCANYVLQLTILFQPMPL 70


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
           protein W03F11.4 protein.
          Length = 1406

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 237 THSSIFNKNNSQAVNVKRIKVTKNLIVGLNHFTLISLNSTGIDIQ 371
           THSS+FNK++  A    R    K L   L +F  ++  + GI ++
Sbjct: 58  THSSVFNKDSRFARRFNRAASAKTLSDSLPNFKSLARLANGISLE 102


>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 434 AH*PISRKNRIAVFVNTCVVCLYINACAI 348
           AH   S+K+R A+F+  C++C +  A A+
Sbjct: 229 AHGQKSKKSR-AIFIQCCIICFFNTATAL 256


>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical
           protein F33H2.5 protein.
          Length = 2144

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 240 HSSIFNKNNSQAVNVKRIKVTKNLIVGLNHFTLISLNSTGI 362
           H  +  ++  +A+ +KRIK     + G  H T + +  T I
Sbjct: 686 HFHMLERSEREAIEMKRIKDYSRRVYGKTHLTRLEMRETTI 726


>Z69794-3|CAA93680.1|  747|Caenorhabditis elegans Hypothetical
           protein R03G8.6 protein.
          Length = 747

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 246 SIFNKNNSQAVNVKRIKVTKNLIVGLNHFTL 338
           +++N NN   VN K I+  K L+  + +F L
Sbjct: 633 AVYNTNNKSIVNSKDIETVKGLVNQIENFEL 663


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,147,542
Number of Sequences: 27780
Number of extensions: 282546
Number of successful extensions: 552
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)