Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1117
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    29   3.6  
At3g07630.2 68416.m00914 prephenate dehydratase family protein s...    29   3.6  
At3g07630.1 68416.m00913 prephenate dehydratase family protein s...    29   3.6  
At1g66830.1 68414.m07596 leucine-rich repeat transmembrane prote...    28   4.8  

>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
           contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +1

Query: 361 LIYKHTTQVFTKTAIRFLRDIGQWALCSFRRHNS*ISKNKITFLYC*VFVYISNKLGPKQ 540
           L YK+   V +K +I  ++     ALC  + HN  +   K  FL C +  ++++  G  Q
Sbjct: 693 LRYKYQP-VRSKESIPEIKAYVSMALCRQKLHNDVMRDWKSLFLKCYLNEFLASLKGSHQ 751

Query: 541 INRRHNYSL 567
           ++R+   +L
Sbjct: 752 VSRKETLAL 760


>At3g07630.2 68416.m00914 prephenate dehydratase family protein
           similar to P-protein: chorismate mutase, prephenate
           dehydratase GB:P43900 [Haemophilus influenzae]
          Length = 381

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 514 ISNKLGPKQINRRHNYSLFRFICGSSKLWLYFTFL 618
           IS+ L P   NR+ N S+ R+ CGSSK +   T L
Sbjct: 18  ISSNLSPP--NRKPNNSIVRYGCGSSKRFRIVTVL 50


>At3g07630.1 68416.m00913 prephenate dehydratase family protein
           similar to P-protein: chorismate mutase, prephenate
           dehydratase GB:P43900 [Haemophilus influenzae]
          Length = 381

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 514 ISNKLGPKQINRRHNYSLFRFICGSSKLWLYFTFL 618
           IS+ L P   NR+ N S+ R+ CGSSK +   T L
Sbjct: 18  ISSNLSPP--NRKPNNSIVRYGCGSSKRFRIVTVL 50


>At1g66830.1 68414.m07596 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00069:
           Eukaryotic protein kinase domain, multiple PF00560:
           Leucine Rich Repeat
          Length = 685

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 321 LNHFTLI--SLNSTGIDIQTYHTSIYKDGNSVFTRYRS 428
           L HF  I  SLN  G+ + ++  SI    +SVFT + S
Sbjct: 12  LTHFFAIATSLNDQGLALLSFKQSIQNQSDSVFTNWNS 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,786,378
Number of Sequences: 28952
Number of extensions: 239204
Number of successful extensions: 409
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)