Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1116
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    25   0.53 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   2.8  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   3.7  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   6.5  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 158 KTGNKVR*NLIRSFCFGIV 102
           +TG KV  ++ ++FCFG +
Sbjct: 516 QTGGKVETSICKNFCFGFI 534


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 396 YIVLTWQRCGSRTNEQFLFRIRHP 467
           +I L WQ+  + T  + L+  R P
Sbjct: 21  FIYLYWQQTSNLTTSKLLYTYRQP 44


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 328 SRTTRGNKIACLFVRCSPNARFT 396
           +RT R N++  L    SP+ RFT
Sbjct: 248 ARTCRDNRLLVLAGTSSPSNRFT 270


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 379 DCNEQRDRLSCCPSSFWSRSLRC 311
           DC ++ D  SC   +  +R+L C
Sbjct: 133 DCKDESDENSCTVETDPNRALDC 155


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,266
Number of Sequences: 336
Number of extensions: 3304
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)