Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1116
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    37   0.002
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    28   1.3  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   2.3  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   6.9  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.9  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    25   9.1  

>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 376 SPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFSYDYSGYV*VAGSPQK 534
           SP +R T+L+ H NA ++G          + +N N+F   Y GY    GSP +
Sbjct: 85  SPESRPTLLYFHANAGNMGHRLPIARVFYSALNMNVFIISYRGYGKSTGSPSE 137



 Score = 30.7 bits (66), Expect = 0.18
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 513 SGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIG 632
           S G PSE  L  D   A + L      S   I++YGQSIG
Sbjct: 131 STGSPSEAGLKIDSQTALEYLMEHPICSKTKIVVYGQSIG 170


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -3

Query: 390 TSIWTATNKETGYLVAPRRSGVEAFDVFFFTF*VLPLSAFCE 265
           TS W ATNK+    VAPR + VE+ DV   T    P + + E
Sbjct: 499 TSFW-ATNKKIIDPVAPRHTAVESGDVVKATIVNGPAAPYAE 539


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 255 NFDPVSSGV-NAYVGSGGRNANLAAIFPGHGGQQNRQQSSL 136
           N D +++G+ N   G+GGRN N   +  G  G  + Q  SL
Sbjct: 27  NLDNINNGLHNQEDGAGGRNENSERVGSGSPGSVSMQVLSL 67


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
 Frame = +2

Query: 179  KIAAKLAFLPPEPTYAFTPDE------------TGSKFL*RSQNALSGNTQNVKKKTSKA 322
            +IA KL   PP+P   +TP              T S  L  +Q +   +T +  +K+  +
Sbjct: 1052 EIAGKLHISPPDPHIGYTPGSDMPSAKLYDQQLTLSPSLMTNQGSNFSSTDSTPRKSINS 1111

Query: 323  STPERRGATR*PVSLFVAVQML 388
            S  E R  T  P S+   ++ L
Sbjct: 1112 SDVESRSKTDGPKSMHDLIKQL 1133


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -3

Query: 234 GVNAYVGSGGRNANLAAIFPGHGGQQNRQQS-SLKLNPFILFRYCL*TLVFTKHYPLQNY 58
           G+  Y GS  R      + P    +  R  + ++ LN  +LF  CL + V    Y  QN 
Sbjct: 454 GLVLYTGSETRIQKNRGLTPSKRSRITRDLNWTIILNFLLLFAMCLFSGVLRSIYSAQNN 513

Query: 57  ESQITDNGEN 28
            +++ +  +N
Sbjct: 514 SARVFELSKN 523


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 89  YLLNTTHYKTMSHKSLIMAKIKFTK 15
           +L+N  HY    +K LI A ++F K
Sbjct: 141 FLINAPHYLNYMYKLLIEAGVEFEK 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,794
Number of Sequences: 5004
Number of extensions: 52252
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)