Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1116
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 74 8e-14
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176... 72 3e-13
01_06_0322 + 28472680-28473053,28474434-28474470,28474578-284748... 68 7e-12
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965... 66 2e-11
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 66 3e-11
02_01_0677 - 5039344-5039793,5040415-5040462,5040540-5040776,504... 65 5e-11
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 50 2e-06
07_03_1218 + 24955627-24955631,24955883-24955937,24956015-249561... 31 0.58
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 29 4.1
11_06_0707 + 26467214-26470309 28 5.4
04_04_0005 + 22095107-22095210,22095347-22095431,22095553-220956... 27 9.4
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 74.1 bits (174), Expect = 8e-14
Identities = 34/77 (44%), Positives = 48/77 (62%)
Frame = +1
Query: 304 KENIEGFYSRTTRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNI 483
+EN+E RT RGN +A ++VR P+A T+L+SHGNA DLG + +L L + N+
Sbjct: 30 RENVEVLRLRTRRGNTVAAVYVR-HPDAATTLLYSHGNAADLGHLYQLFLHLSFNLRVNV 88
Query: 484 FSYDYSGYV*VAGSPQK 534
YDYSGY +G P +
Sbjct: 89 LGYDYSGYGQSSGKPSE 105
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +3
Query: 513 SGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIGT 635
S GKPSE N YADI+AA++ L +G E IILYGQS+G+
Sbjct: 99 SSGKPSEHNTYADIEAAYKCLIENFGAKEEEIILYGQSVGS 139
>06_03_0843 +
25315089-25315417,25317274-25317310,25317439-25317675,
25317745-25317792,25318144-25318577,25318675-25318759
Length = 389
Score = 72.1 bits (169), Expect = 3e-13
Identities = 31/68 (45%), Positives = 45/68 (66%)
Frame = +1
Query: 334 TTRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFSYDYSGYV* 513
T RG ++ ++VR P AR T+L+SHGNA DLGQM ++ L + +N N+ YDYSGY
Sbjct: 60 TGRGTEVVAMYVR-QPGARLTLLYSHGNAADLGQMYELFVELSSHLNVNLMGYDYSGYGQ 118
Query: 514 VAGSPQKR 537
+G P ++
Sbjct: 119 SSGKPSEQ 126
Score = 58.0 bits (134), Expect = 6e-09
Identities = 25/41 (60%), Positives = 33/41 (80%)
Frame = +3
Query: 513 SGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIGT 635
S GKPSE+N Y+DI+AA++ L YG + ENIILYGQS+G+
Sbjct: 119 SSGKPSEQNTYSDIEAAYRCLVETYGATEENIILYGQSVGS 159
>01_06_0322 +
28472680-28473053,28474434-28474470,28474578-28474814,
28474891-28474938,28475263-28475661
Length = 364
Score = 67.7 bits (158), Expect = 7e-12
Identities = 34/76 (44%), Positives = 45/76 (59%)
Frame = +1
Query: 301 EKENIEGFYSRTTRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCN 480
+++ E RT RGN+I + VR A T+L+SHGNA DLGQM ++ L R+ N
Sbjct: 64 DEDGTEVVRLRTRRGNEIVGVHVR-HERASATLLYSHGNAADLGQMYGLFVELSRRLRIN 122
Query: 481 IFSYDYSGYV*VAGSP 528
+F YDYSGY G P
Sbjct: 123 LFGYDYSGYGRSTGKP 138
Score = 58.0 bits (134), Expect = 6e-09
Identities = 24/41 (58%), Positives = 34/41 (82%)
Frame = +3
Query: 513 SGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIGT 635
S GKP+E N YADI+AA+ L+ +YG++ E+IILYGQS+G+
Sbjct: 134 STGKPTECNTYADIEAAYNCLKEKYGVADEDIILYGQSVGS 174
>02_05_1073 -
33895608-33895880,33896133-33896180,33896273-33896509,
33897233-33897269,33898603-33898913
Length = 301
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/67 (47%), Positives = 40/67 (59%)
Frame = +1
Query: 334 TTRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFSYDYSGYV* 513
T G ++ F R P+AR T+L+SHGNA DLGQM +L L + NI SYDYSGY
Sbjct: 54 TKGGTRVVAAFWR-HPSARLTLLYSHGNAADLGQMLGLFLELRAHLRVNIMSYDYSGYGA 112
Query: 514 VAGSPQK 534
G P +
Sbjct: 113 STGKPSE 119
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/45 (55%), Positives = 31/45 (68%)
Frame = +3
Query: 501 GLCVSGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIGT 635
G S GKPSE N Y DI+A + L YGI PE++ILYGQS+G+
Sbjct: 109 GYGASTGKPSEYNTYCDIEAVYDCLTKVYGIEPEDLILYGQSVGS 153
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 182 IAAKLAFLPPE-PTYAFTPDETG 247
+AA+LAF PPE PTY +E G
Sbjct: 8 VAARLAFFPPEPPTYELVAEEGG 30
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 65.7 bits (153), Expect = 3e-11
Identities = 28/67 (41%), Positives = 42/67 (62%)
Frame = +1
Query: 334 TTRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFSYDYSGYV* 513
T +G+K+ ++R +P AR T+L+SHGNA DLGQ+ ++ L + N+ YDYSGY
Sbjct: 56 TRKGSKVVAFYLR-NPAARLTVLYSHGNAADLGQLYDLFVQLKVNLKVNLMGYDYSGYGA 114
Query: 514 VAGSPQK 534
G P +
Sbjct: 115 STGKPSE 121
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/45 (62%), Positives = 35/45 (77%)
Frame = +3
Query: 501 GLCVSGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIGT 635
G S GKPSE+N YADI+A +Q L T YGIS E++ILYGQS+G+
Sbjct: 111 GYGASTGKPSEENTYADIEAVYQCLETEYGISQEDLILYGQSVGS 155
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +2
Query: 182 IAAKLAFLPPEP-TYAFTPDE 241
+AA+ AF PPEP TYA DE
Sbjct: 10 LAARFAFFPPEPATYAVRKDE 30
>02_01_0677 -
5039344-5039793,5040415-5040462,5040540-5040776,
5040862-5040898,5042474-5042491,5042801-5043153
Length = 380
Score = 64.9 bits (151), Expect = 5e-11
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Frame = +1
Query: 310 NIEGFYSRTTRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFS 489
N+E RT RG ++ ++VR AR T+L+SHGNA DLGQM ++ L +N N+
Sbjct: 60 NVEARRLRTKRGTEVVAMYVR-QAGARLTLLYSHGNAADLGQMFELFVELSAHLNVNLMG 118
Query: 490 ------YDYSGYV*VAGSPQK 534
YDYSGY +G P +
Sbjct: 119 IRIRRLYDYSGYGQSSGKPSE 139
Score = 58.0 bits (134), Expect = 6e-09
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +3
Query: 513 SGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIGT 635
S GKPSE N YADI+A ++ L YG S ENIILYGQS+G+
Sbjct: 133 SSGKPSEHNTYADIEAVYRCLVETYGASEENIILYGQSVGS 173
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = +3
Query: 513 SGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIGT 635
S GK SE N +ADI+AA++ L YG E+IILYGQS+G+
Sbjct: 12 SSGKASEANTFADIEAAYKCLVEVYGTREEDIILYGQSVGS 52
>07_03_1218 +
24955627-24955631,24955883-24955937,24956015-24956131,
24957142-24957306,24957703-24957958,24957987-24958051
Length = 220
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 513 SGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIG 632
S G PS+K + D AA L R I I+++G+S+G
Sbjct: 6 SDGYPSQKGIINDAQAALDHLVQRKDIDTSRIVVFGRSLG 45
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 94 CSQTIPKQNERIKFQRTLLPVLLSAMPRKN 183
C++T PK N K +R LLP+ +S + R N
Sbjct: 596 CNETTPKSNRAKKKKRMLLPLGVSNINRPN 625
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 253 ISLTLTERAEWQYSEREKENIEGFYSRTTRGNKIACLFV 369
++L TE+ + YSE NIE + + T + + LFV
Sbjct: 726 LNLDCTEQTDEAYSEENARNIEKIFEKLTPPHNLEDLFV 764
>04_04_0005 +
22095107-22095210,22095347-22095431,22095553-22095623,
22096613-22096727,22096884-22096963,22097302-22097386,
22098081-22098175,22098298-22098348,22098866-22098946,
22099659-22099731,22100057-22100134,22100224-22100256
Length = 316
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 573 LRTRYGISPENIILYGQSIG 632
LRT YG SP IIL G S+G
Sbjct: 135 LRTLYGDSPPAIILVGHSMG 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,379,469
Number of Sequences: 37544
Number of extensions: 324869
Number of successful extensions: 799
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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