Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1116
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39322| Best HMM Match : Abhydrolase_2 (HMM E-Value=0.0028)         151   3e-37
SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_21487| Best HMM Match : MAM (HMM E-Value=0)                         29   3.2  
SB_45326| Best HMM Match : Ank (HMM E-Value=5.2)                       28   7.3  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_39322| Best HMM Match : Abhydrolase_2 (HMM E-Value=0.0028)
          Length = 253

 Score =  151 bits (367), Expect = 3e-37
 Identities = 64/94 (68%), Positives = 80/94 (85%)
 Frame = +1

Query: 256 SLTLTERAEWQYSEREKENIEGFYSRTTRGNKIACLFVRCSPNARFTILFSHGNAVDLGQ 435
           +L L+E++EWQY ++E ++IE F ++T RGN I C+F+RCSPNARFT+LFSHGNAVDLGQ
Sbjct: 46  ALHLSEKSEWQYGQKELDSIEAFTTKTNRGNHIGCMFIRCSPNARFTLLFSHGNAVDLGQ 105

Query: 436 MSSFYLGLGTRINCNIFSYDYSGYV*VAGSPQKR 537
           MSSFY+GLGTRINCNIFSYDYSGY    G P ++
Sbjct: 106 MSSFYVGLGTRINCNIFSYDYSGYGVSTGKPSEK 139



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 39/45 (86%), Positives = 41/45 (91%)
 Frame = +3

Query: 501 GLCVSGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIGT 635
           G  VS GKPSEKNLY+DIDAAW ALRTRYGISPENI+LYGQSIGT
Sbjct: 128 GYGVSTGKPSEKNLYSDIDAAWNALRTRYGISPENIVLYGQSIGT 172



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = +2

Query: 119 MNGXXXXXXXXXXXXXXXXGKIAAKLAFLPPEPTYAFTPDETGSKFL*RSQNA 277
           MNG                 KIAAKLAFLPPEPTY+      G + L  S+ +
Sbjct: 1   MNGLSFSEICCLFCCPPCPSKIAAKLAFLPPEPTYSLQDLSEGGQALHLSEKS 53


>SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1138

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = -3

Query: 201 NANLAAIFPGHGGQQNRQQSSLKLNPFILFRYCL*TLVFTKHYPLQNYESQITDNGENKI 22
           +A+LA +  G   + N  QSS     FIL   C  T+V  KH     Y+S       +++
Sbjct: 419 DADLAQVISGDSYKDNGSQSSFVREFFILLSICN-TVVVNKHARPHPYQSGPPPRNTSEM 477

Query: 21  HKTDR 7
           H +D+
Sbjct: 478 HPSDK 482


>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
          Length = 874

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 388 EHLDCNEQRDRLSCCPSSFWSRSLRCFLFHVLSIATQRV 272
           E L C+   + +S C SS WS  LRC      ++  Q V
Sbjct: 435 ESLICSGGENAVSACASSGWSDELRCTANKTAAVVCQGV 473


>SB_45326| Best HMM Match : Ank (HMM E-Value=5.2)
          Length = 309

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 396 SETSIWTATNK-ETGYLVAPRRSGVEAFDV 310
           SE S+W A  + +TGYL   R  G   FDV
Sbjct: 2   SELSMWEAARRGDTGYLKRCRELGARNFDV 31


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 388  RFTILFSHGNAVDLG-QMSSFYLGLGTRI 471
            R T + SHGN VDLG Q  S  L L T++
Sbjct: 2298 RLTSIHSHGNIVDLGAQRISDGLALNTKV 2326


>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 625 LCPYKIMFSGLMPYRVRNACHAASMS 548
           LC + + F+G+   R RN CH + +S
Sbjct: 186 LCLFSLYFAGMAFARKRNLCHGSKLS 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,523,054
Number of Sequences: 59808
Number of extensions: 389108
Number of successful extensions: 777
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)