Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1116
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75712-10|CAB00039.2|  332|Caenorhabditis elegans Hypothetical p...   107   9e-24
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    52   3e-07
AC024857-2|AAK31567.2|  463|Caenorhabditis elegans Hypothetical ...    37   0.014
Z81493-7|CAE46664.1|  342|Caenorhabditis elegans Hypothetical pr...    35   0.056
Z81493-6|CAB04038.1|  335|Caenorhabditis elegans Hypothetical pr...    35   0.056
Z47067-3|CAA87330.2|  446|Caenorhabditis elegans Hypothetical pr...    33   0.17 
Z81493-8|CAB04043.1|  305|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81061-3|CAB02933.1|  232|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U00032-12|AAA50629.1|  482|Caenorhabditis elegans Hypothetical p...    29   2.1  
Z99280-5|CAB16501.2|  413|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC199169-12|ABO33253.1|  478|Caenorhabditis elegans Hypothetical...    28   4.9  
Z70308-1|CAA94351.1|  213|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    28   6.4  
U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center...    27   8.5  
AF040655-7|AAB95044.2|  565|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z75712-10|CAB00039.2|  332|Caenorhabditis elegans Hypothetical
           protein K04G2.2 protein.
          Length = 332

 Score =  107 bits (256), Expect = 9e-24
 Identities = 51/95 (53%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
 Frame = +1

Query: 259 LTLTE-RAEWQYSEREKEN-IEGFYSRTTRGNKIACLFVRCSPNARFTILFSHGNAVDLG 432
           L L E RA W + E +  N +E   +RT R N++AC  +R  PN+ FT+LFSHGNAVDLG
Sbjct: 67  LVLIEGRAAWPHQEVDMANCVEMRITRTRRRNRVACTMIRPLPNSHFTLLFSHGNAVDLG 126

Query: 433 QMSSFYLGLGTRINCNIFSYDYSGYV*VAGSPQKR 537
           QM+SF  GLG  +NCN+FSYDYSGY    G P ++
Sbjct: 127 QMTSFLYGLGFHLNCNVFSYDYSGYGCSTGKPSEK 161



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 29/45 (64%), Positives = 35/45 (77%)
 Frame = +3

Query: 501 GLCVSGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIGT 635
           G   S GKPSEKNLYADI AA++ L++ +G+  E IILYGQSIGT
Sbjct: 150 GYGCSTGKPSEKNLYADITAAFELLKSEFGVPKEKIILYGQSIGT 194



 Score = 32.3 bits (70), Expect = 0.30
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 182 IAAKLAFLPPEPTYAFTPD 238
           I +KLAF+PPEP+Y  T D
Sbjct: 46  IVSKLAFMPPEPSYTITED 64


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
 Frame = +1

Query: 313 IEGFYSRTTRGNKIACLFVRCSPN--ARFTILFSHGNAVDLGQMSSFYLGLGTRIN---- 474
           + GF  +T   NKI C++V C      RFT+L+SH N  DL   S   +G+ + I+    
Sbjct: 241 VRGFVLKTKNKNKIGCVYVGCPDGFAPRFTLLYSHPNGSDL---SDHLIGIPSLIDIARF 297

Query: 475 --CNIFSYDYSGY 507
             C ++SYDY+GY
Sbjct: 298 YRCEVYSYDYTGY 310



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +3

Query: 501 GLCVSGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIGT 635
           G  +SGG  SE NLY+DI A ++ +     + P+ I+L G SIG+
Sbjct: 309 GYGISGGIASESNLYSDIQAIYEHITLEKRVDPKKIVLLGYSIGS 353


>AC024857-2|AAK31567.2|  463|Caenorhabditis elegans Hypothetical
           protein Y71G12A.4 protein.
          Length = 463

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +3

Query: 501 GLCVSGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIGT 635
           G  VS G  +EKN+YA ++A  +      G S + IIL G S+GT
Sbjct: 253 GYGVSEGTTNEKNVYAAVEAVMKYAMGTLGYSQDKIILIGFSLGT 297



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 376 SPNARFTILFSHGNAVDLG---QMSSFYLGLGTRINCNIFSYDYSGY 507
           SPN    I+FS  N+ DLG    M   +  +   + C++  YDY GY
Sbjct: 211 SPNL---IIFSQPNSSDLGCCLMMDPNFADIADFLQCDLLIYDYPGY 254


>Z81493-7|CAE46664.1|  342|Caenorhabditis elegans Hypothetical
           protein F01D5.7b protein.
          Length = 342

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 501 GLCVSGGKPSEKNLYADIDAAWQ-ALRTRYGISPENIILYGQSIGT 635
           G   S G  SEKN+YAD+ A ++  L+TR     + I++ G SIGT
Sbjct: 162 GYGFSSGTQSEKNMYADVRAVYEHILKTR---PDKKIVVIGYSIGT 204



 Score = 31.1 bits (67), Expect = 0.69
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
 Frame = +1

Query: 295 EREKENIEGFYSRTTRGNKIACLFVRCSPN--------ARFTILFSHGNAVDLGQM---- 438
           +R    ++ F   T+  + + C  V+CSPN        A   +LF   ++ DLG      
Sbjct: 83  DRVHPEVKVFSVTTSEDSHLVC--VKCSPNCYSKNPEVANQVVLFCQSSSADLGSFLQPN 140

Query: 439 SSFYLGLGTRINCNIFSYDYSGYV*VAGSPQKR 537
           S  +         +++++DYSGY   +G+  ++
Sbjct: 141 SMNFSTFANLFETDVYAFDYSGYGFSSGTQSEK 173


>Z81493-6|CAB04038.1|  335|Caenorhabditis elegans Hypothetical
           protein F01D5.7a protein.
          Length = 335

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 501 GLCVSGGKPSEKNLYADIDAAWQ-ALRTRYGISPENIILYGQSIGT 635
           G   S G  SEKN+YAD+ A ++  L+TR     + I++ G SIGT
Sbjct: 162 GYGFSSGTQSEKNMYADVRAVYEHILKTR---PDKKIVVIGYSIGT 204



 Score = 31.1 bits (67), Expect = 0.69
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
 Frame = +1

Query: 295 EREKENIEGFYSRTTRGNKIACLFVRCSPN--------ARFTILFSHGNAVDLGQM---- 438
           +R    ++ F   T+  + + C  V+CSPN        A   +LF   ++ DLG      
Sbjct: 83  DRVHPEVKVFSVTTSEDSHLVC--VKCSPNCYSKNPEVANQVVLFCQSSSADLGSFLQPN 140

Query: 439 SSFYLGLGTRINCNIFSYDYSGYV*VAGSPQKR 537
           S  +         +++++DYSGY   +G+  ++
Sbjct: 141 SMNFSTFANLFETDVYAFDYSGYGFSSGTQSEK 173


>Z47067-3|CAA87330.2|  446|Caenorhabditis elegans Hypothetical
           protein C43C3.3 protein.
          Length = 446

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
 Frame = +1

Query: 244 GIEISLTLTERAEWQYSERE---KENIEGFYSRTTRGNKIACLFVRCSPNARFTILFSHG 414
           G E  +TLT+  + +Y+E     ++N +  + +TTR N + CL+ R     RF+ + S+G
Sbjct: 96  GSECDVTLTDLPKHRYAETTVVLEDNADLSFGKTTRLNHVFCLYTRNVKTIRFSDV-SNG 154

Query: 415 NAV 423
           + V
Sbjct: 155 HEV 157


>Z81493-8|CAB04043.1|  305|Caenorhabditis elegans Hypothetical
           protein F01D5.8 protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 501 GLCVSGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIGT 635
           G   S G   EKN+YAD+ A ++ +        + I++ G SIGT
Sbjct: 119 GYGFSSGTQGEKNVYADVRAVYEKILEMR--PDKKIVVMGYSIGT 161


>Z81061-3|CAB02933.1|  232|Caenorhabditis elegans Hypothetical
           protein F14H8.4 protein.
          Length = 232

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 133 FQRTLLPVLLSAMPRKNCGQVSISASRTNVCI 228
           F RT  PVL +A+P+ N   + I+AS T+  I
Sbjct: 187 FHRTFCPVLTNAIPKPNAPPMRIAASPTSAQI 218


>U00032-12|AAA50629.1|  482|Caenorhabditis elegans Hypothetical
           protein F37A4.1 protein.
          Length = 482

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +3

Query: 501 GLCVSGGKPSEKNLYADIDAAWQALRTRYGISPENIILYGQSIG 632
           G   S G P   N  A  DA  Q      G   ENI+L+G SIG
Sbjct: 260 GFGESTGLPYAVNTLAAADAVMQYAIQVLGYRQENIVLFGWSIG 303


>Z99280-5|CAB16501.2|  413|Caenorhabditis elegans Hypothetical
           protein Y57G11B.3 protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 473 TVIYLVMIIRVMCKWREALRKELVC*HRCCVASVTN 580
           T++ +  I+R M K+ + LRKELV  + C   SV N
Sbjct: 129 TLVDVSRIVRKMTKFTDCLRKELVARNVCTRDSVKN 164


>AC199169-12|ABO33253.1|  478|Caenorhabditis elegans Hypothetical
           protein F38A1.14 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 373 CSPNARFTILFSHGNAVDLGQM-SSFYLGLGTRINCNIFSYDYSGY 507
           C P  + T+LF++ N  D   + S++Y G  T      F+ DY+GY
Sbjct: 161 CKPGKKVTLLFAYSNDFDSATVRSTWYQGFLT------FTDDYAGY 200


>Z70308-1|CAA94351.1|  213|Caenorhabditis elegans Hypothetical
           protein F49E11.4 protein.
          Length = 213

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 187 RNFSWAWRTTKQATKFAET*SVHFVSVLFVNTSIY 83
           R  SW+ + T  ATKFAET   +   V+    SI+
Sbjct: 58  RKISWSKKLTNAATKFAETCPKNHSVVMNTGESIF 92


>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
           protein K02F3.6 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 274 RAEWQYSEREKENI-EGFYSRTTRGNKIACLFVRCSPNARFTILFSHG 414
           R+ ++  +REK N+ EG+ SR  +  K+   +V+   + +  +LF HG
Sbjct: 100 RSLFEKKQREKPNVLEGWDSRYIKLKKVRLHYVQTGSDDKPLMLFIHG 147


>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 198 ANLAAIFPGHGGQQNRQQSSLKLNPFI 118
           A L  +F GHGGQQ  +  S  L P++
Sbjct: 67  AFLFGVFDGHGGQQCSRHISTNLYPYL 93


>U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center
           kinase family protein2 protein.
          Length = 829

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 266 SQNALSGNTQNVKKKTSKASTPERRGAT 349
           +Q A +GN++N    TS ASTP   G T
Sbjct: 426 AQKAAAGNSKNRFSSTSIASTPSEDGLT 453


>AF040655-7|AAB95044.2|  565|Caenorhabditis elegans Hypothetical
           protein T24E12.9 protein.
          Length = 565

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 382 LDCNEQRDRLSCCPSSFWSRSLRCFLFHVLS 290
           L+CN Q++ ++  PSS+ + +   FL H L+
Sbjct: 36  LECNRQQNNITAKPSSYATANNNIFLEHQLA 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,563,678
Number of Sequences: 27780
Number of extensions: 297682
Number of successful extensions: 752
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)